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Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis.


ABSTRACT: BACKGROUND:Proteomics is an emerging field in the study of joint disease. Our two aims with this pilot analysis were to compare healthy human knee articular cartilage with meniscus, two tissues both known to become affected in the osteoarthritic disease process, and to compare two mass spectrometry (MS)-based methods: data-dependent acquisition (DDA) and data-independent acquisition (DIA). METHODS:Healthy knee articular cartilage taken from the medial tibial condyle and medial meniscus samples taken from the body region were obtained from three adult forensic medicine cases. Proteins were extracted from tissue pieces and prepared for MS analysis. Each sample was subjected to liquid chromatography (LC)-MS/MS analysis using an Orbitrap mass spectrometer, and run in both DDA and DIA mode. Linear mixed effects models were used for statistical analysis. RESULTS:A total of 653 proteins were identified in the DDA analysis, of which the majority was present in both tissue types. Only proteins with quantitation information in both tissues (n?=?90) were selected for more detailed analysis, of which the majority did not statistically significantly differ in abundance between the two tissue types, in either of the MS analyses. However, 21 proteins were statistically significantly different (p?

SUBMITTER: Folkesson E 

PROVIDER: S-EPMC6267052 | biostudies-literature | 2018 Nov

REPOSITORIES: biostudies-literature

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Differential protein expression in human knee articular cartilage and medial meniscus using two different proteomic methods: a pilot analysis.

Folkesson Elin E   Turkiewicz Aleksandra A   Englund Martin M   Önnerfjord Patrik P  

BMC musculoskeletal disorders 20181129 1


<h4>Background</h4>Proteomics is an emerging field in the study of joint disease. Our two aims with this pilot analysis were to compare healthy human knee articular cartilage with meniscus, two tissues both known to become affected in the osteoarthritic disease process, and to compare two mass spectrometry (MS)-based methods: data-dependent acquisition (DDA) and data-independent acquisition (DIA).<h4>Methods</h4>Healthy knee articular cartilage taken from the medial tibial condyle and medial men  ...[more]

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