Dataset Information

The Mitochondrial Genomes of Phytophagous Scarab Beetles and Systematic Implications.

ABSTRACT: In this study, we newly sequenced five mitogenomes of representatives of phytophagous scarab beetles (Coleoptera: Scarabaeidae) by using next-generation sequencing technology. Two species have complete (or nearly complete) mitogenome sequences, namely Popillia mutans Newman (Coleoptera: Scarabaeidae) and Holotrichia oblita Faldermann (Coleoptera: Scarabaeidae). The remaining three species have the partial mitogenomes, and the missing genes are mainly located adjacent to the control region. The complete (or nearly complete) mitogenomes have the same genome structure as most of the existing Scarabaeidae mitogenomes. We conducted phylogenetic analyses together with 24 published mitogenomes of Scarabaeoidea. The results supported a basal split of coprophagous and phytophagous Scarabaeidae. The subfamily Sericinae was recovered as sister to all other phytophagous scarab beetles. All analyses supported a non-monophyletic Melolonthinae, which included two different non-sister clades. The Cetoniinae was recovered as sister to a clade including Rutelinae and Dynastinae. Although the Rutelinae was rendered paraphyletic by Dynastinae in the Bayesian trees inferred under the site-heterogeneous CAT-GTR or CAT-MTART model, discordant patterns were given in some of ML trees estimated using the homogeneous GTR model.

SUBMITTER: Song N

PROVIDER: S-EPMC6275328 | biostudies-literature | 2018 Nov

REPOSITORIES: biostudies-literature

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The Mitochondrial Genomes of Phytophagous Scarab Beetles and Systematic Implications.

Song Nan N Zhang Hao H

Journal of insect science (Online) 20181101 6

In this study, we newly sequenced five mitogenomes of representatives of phytophagous scarab beetles (Coleoptera: Scarabaeidae) by using next-generation sequencing technology. Two species have complete (or nearly complete) mitogenome sequences, namely Popillia mutans Newman (Coleoptera: Scarabaeidae) and Holotrichia oblita Faldermann (Coleoptera: Scarabaeidae). The remaining three species have the partial mitogenomes, and the missing genes are mainly located adjacent to the control region. The c ...[more]

PMID: 30508200

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Project description:Body shape reflects species' evolution and mediates its role in the environment as it integrates gene expression, life style, and structural morphology. Its comparative analysis may reveal insight on what shapes shape, being a useful approach when other evidence is lacking. Here we investigated evolutionary patterns of body shape in the highly diverse phytophagous chafers (Scarabaeidae: Pleurosticti), a polyphagous group utilizing different parts of angiosperms. Because the reasons of their successful diversification are largely unknown, we used a phylogenetic tree and multivariate analysis on twenty linear measurements of body morphology including all major Pleurosticti lineages to infer patterns of morphospace covariation and divergence. The chafer's different feeding types resulted to be not distinguishable in the described morphospace which was largely attributed to large occupancy of the morphospace of some feeding types and to multiple convergences of feeding behavior (particularly of anthophagy). Low correlation between molecular and morphological rates of evolution, including significant rate shifts for some lineages, indicated directed selection within feeding types. This is supported by morphospace divergence within feeding types and convergent evolution in Australian Melolonthinae. Traits driving morphospace divergence were extremities and traits linked with locomotion behavior, but also body size. Being highly adaptive for burrowing and locomotion these traits showed major changes in the evolution of pleurostict scarabs. These activities also affected another trait, the metacoxal length, which is highly influenced by key innovations of the metacoxa (extended mesal process, secondary closure) particularly in one lineage, the Sericini. Significant shape divergence between major lineages and a lack of strong differentiation among closely related lineages indicated that the question about the presence or absence of competition-derived directed selection needs to be addressed for different time scales. Striking divergence between some sister lineages at their origin revealed strong driven selection towards morphospace divergence, possibly linked with resource partitioning.

Project description:Insect mitochondrial genomes (mitogenomes) exhibit high diversity in some lineages. The gene rearrangement and large intergenic spacer (IGS) have been reported in several Coleopteran species, although very little is known about mitogenomes of Meloidae.We determined complete or nearly complete mitogenomes of seven meloid species. The circular genomes encode 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) and two ribosomal RNAs (rRNAs), and contain a control region, with gene arrangement identical to the ancestral type for insects. The evolutionary rates of all PCGs indicate that their evolution is based on purifying selection. The comparison of tRNA secondary structures indicates diverse substitution patterns in Meloidae. Remarkably, all mitogenomes of the three studied Hycleus species contain two large intergenic spacers (IGSs). IGS1 is located between trnW and trnC, including a 9 bp consensus motif. IGS2 is located between trnS2 (UCN) and nad1, containing discontinuous repeats of a pentanucleotide motif and two 18-bp repeat units in both ends. To date, IGS2 is found only in genera Hycleus across all published Coleopteran mitogenomes. The duplication/random loss model and slipped-strand mispairing are proposed as evolutionary mechanisms for the two IGSs (IGS1, IGS2). The phylogenetic analyses using MrBayes, RAxML, and PhyloBayes methods based on nucleotide and amino acid datasets of 13 PCGs from all published mitogenomes of Tenebrionoids, consistently recover the monophylies of Meloidae and Tenebrionidae. Within Meloidae, the genus Lytta clusters with Epicauta rather than with Mylabris. Although data collected thus far could not resolve the phylogenetic relationships within Meloidae, this study will assist in future mapping of the Meloidae phylogeny.This study presents mitogenomes of seven meloid beetles. New mitogenomes retain the genomic architecture of the Coleopteran ancestor, but contain two IGSs in the three studied Hycleus species. Comparative analyses of two IGSs suggest that their evolutionary mechanisms are duplication/random loss model and slipped-strand mispairing.

Dataset Information

The Mitochondrial Genomes of Phytophagous Scarab Beetles and Systematic Implications.

Publications

The Mitochondrial Genomes of Phytophagous Scarab Beetles and Systematic Implications.

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