Dataset Information

FADS1 and the Timing of Human Adaptation to Agriculture.

ABSTRACT: Variation at the FADS1/FADS2 gene cluster is functionally associated with differences in lipid metabolism and is often hypothesized to reflect adaptation to an agricultural diet. Here, we test the evidence for this relationship using both modern and ancient DNA data. We show that almost all the inhabitants of Europe carried the ancestral allele until the derived allele was introduced ?8,500?years ago by Early Neolithic farming populations. However, we also show that it was not under strong selection in these populations. We find that this allele, and other proposed agricultural adaptations at LCT/MCM6 and SLC22A4, were not strongly selected until much later, perhaps as late as the Bronze Age. Similarly, increased copy number variation at the salivary amylase gene AMY1 is not linked to the development of agriculture although, in this case, the putative adaptation precedes the agricultural transition. Our analysis shows that selection at the FADS locus was not tightly linked to the initial introduction of agriculture and the Neolithic transition. Further, it suggests that the strongest signals of recent human adaptation in Europe did not coincide with the Neolithic transition but with more recent changes in environment, diet, or efficiency of selection due to increases in effective population size.

SUBMITTER: Mathieson S

PROVIDER: S-EPMC6278866 | biostudies-literature | 2018 Dec

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

FADS1 and the Timing of Human Adaptation to Agriculture.

Mathieson Sara S Mathieson Iain I

Molecular biology and evolution 20181201 12

Variation at the FADS1/FADS2 gene cluster is functionally associated with differences in lipid metabolism and is often hypothesized to reflect adaptation to an agricultural diet. Here, we test the evidence for this relationship using both modern and ancient DNA data. We show that almost all the inhabitants of Europe carried the ancestral allele until the derived allele was introduced ∼8,500 years ago by Early Neolithic farming populations. However, we also show that it was not under strong selec ...[more]

PMID: 30272210

Similar Datasets

Project description:Bhutan represents typical mountain agriculture farming systems with unique challenges. The agriculture production systems under environmental constraints are typical of small-scale agricultural subsistence systems related to family farming in the Himalayan Mountains with very low level of mechanization, numerous abiotic stresses influenced by climate and other socio-economic constraints. Quinoa was first introduced in 2015 through FAO's support to Bhutan as a new crop to enhance the food and nutritional security of the Bhutanese people. The main objective was to adapt this versatile crop to the local mountain agriculture conditions as a climate resilient crop for diversifying the farmer's traditional potato and maize based cropping systems. Ten quinoa varieties were evaluated at two different sites representing contrasted mountain agroecologies in Bhutan and were tested during the two agricultural campaigns 2016 and 2017. Yusipang (2600 masl) represents the cool temperate agroecological zone, and Lingmethang (640 masl) the dry subtropical agroecological zone. The sowing time differed depending on the growing season and elevation of the sites. Results indicate that quinoa can be successfully grown in Bhutan for the two different agroecological zones. The grain yields varied from 0.61 to 2.68 t.ha-1 in the high altitude areas where quinoa was seeded in spring and harvested in autumn season. The grain yield in the lower elevation ranged from 1.59 to 2.98 t.ha-1 where the crop was sown in autumn and harvested in winter season. Depending on genotypes' characteristics and agroecological zones, crop maturity significantly varied from 92 to 197 days with all genotypes maturing much earlier in the lower elevations where mean minimum and maximum temperatures during the growing season were higher. Quinoa is rapidly promoted across different agroecological contexts in the country as a new climate resilient and nutrient dense pseudo cereal to diversify the traditional existing cropping system with some necessary adjustments in sowing time, suitable varieties and crop management practices. To fast track the rapid promotion of this new crop in Bhutan, four varieties have been released in 2018. In just over three years, the cultivation of quinoa as a new cereal has been demonstrated and partially adapted to the maize and potato based traditional cropping systems under the Himalayan mountain agriculture. Quinoa is also being adapted to the rice based cropping system and rapidly promoted as an alternative food security crop in the current 12th Five Year national development plan of Bhutan. To rapidly promote quinoa cultivation, the Royal Government of Bhutan is supporting the supply of free quinoa seeds, cultivation technologies and milling machines to the rural communities. To promote the consumption and utilization of quinoa at national level, consumer awareness are created by preparing and serving local Bhutanese dishes from quinoa during local food fairs and farmer's field days. In addition, the Royal Government of Bhutan has included quinoa in the school feeding programme recognizing the high nutrient value of the crop for enhancing and securing the nutritional needs of the young children.

Dataset Information

FADS1 and the Timing of Human Adaptation to Agriculture.

Publications

FADS1 and the Timing of Human Adaptation to Agriculture.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets