Dataset Information

The Ashtamudi Lake short-neck clam: re-assigned to the genus Marcia H. Adams & A. Adams, 1857 (Bivalvia, Veneridae).

ABSTRACT: The economically valuable bivalve mollusc, known as the short-neck clam, is the major fishery resource of the brackishwater Ashtamudi Lake in Kerala, India. This fishery carries a Marine Stewardship Council certification for sustainability wherein it and all hitherto published reports identify the short-neck clam or yellow-foot clam as Paphiamalabarica (Dillwyn, 1817). It is noted that this name does not conform with current nomenclature and is now correctly referred to Protapesgallus (Gmelin, 1791). Furthermore, it is shown that the identification is also incorrect. Comparative shell morphology of venerid clams of the subfamily Tapetinae from the south Indian coast demonstrates that the short-neck clam in Ashtamudi Lake is Marciarecens (Holten, 1802). Small numbers of M.opima (Gmelin, 1791) were found in Ashtamudi Lake but appear not to be part of, or contribute significantly to, the fishery. The venerid clams Protapesgallus and P.ziczac (Linnaeus, 1758) are not found in Ashtamudi Lake but are inhabitants of the shallow coastal waters of south India. Descriptions of the four confused species M.recens, M.opima, P.gallus, and P.ziczac are given. On the basis of this study, the species involved in Marine Stewardship Council (MSC) certification may be better considered at the generic level of Marcia or at the species level as Marciarecens, the most dominant species in the Ashtamudi Lake clam fishery zone.

SUBMITTER: Arathi AR

PROVIDER: S-EPMC6281702 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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Publications

The Ashtamudi Lake short-neck clam: re-assigned to the genus Marcia H. Adams & A. Adams, 1857 (Bivalvia, Veneridae).

Arathi Anitha R AR Oliver P Graham PG Ravinesh Raveendhiran R Kumar Appukuttannair Biju AB

ZooKeys 20181128 799

The economically valuable bivalve mollusc, known as the short-neck clam, is the major fishery resource of the brackishwater Ashtamudi Lake in Kerala, India. This fishery carries a Marine Stewardship Council certification for sustainability wherein it and all hitherto published reports identify the short-neck clam or yellow-foot clam as Paphiamalabarica (Dillwyn, 1817). It is noted that this name does not conform with current nomenclature and is now correctly referred to Protapesgallus< ...[more]

PMID: 30532615

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Project description:Despite the large number of animal complete mitochondrial genomes currently available in public databases, knowledge about mitochondrial genomics in invertebrates is uneven. This paper reports, for the first time, the complete mitochondrial genome of the grooved carpet shell, Ruditapes decussatus, also known as the European clam. Ruditapes decussatus is morphologically and ecologically similar to the Manila clam Ruditapes philippinarum, which has been recently introduced for aquaculture in the very same habitats of Ruditapes decussatus, and that is replacing the native species. Currently the production of the European clam is almost insignificant, nonetheless it is considered a high value product, and therefore it is an economically important species, especially in Portugal, Spain and Italy. In this work we: (i) assembled Ruditapes decussatus mitochondrial genome from RNA-Seq data, and validated it by Sanger sequencing; (ii) analyzed and characterized the Ruditapes decussatus mitochondrial genome, comparing its features with those of other venerid bivalves; (iii) assessed mitochondrial sequence polymorphism (SP) and copy number variation (CNV) of tandem repeats across 26 samples. Despite using high-throughput approaches we did not find evidence for the presence of two sex-linked mitochondrial genomes, typical of the doubly uniparental inheritance of mitochondria, a phenomenon known in ?100 bivalve species. According to our analyses, Ruditapes decussatus is more genetically similar to species of the Genus Paphia than to the congeneric Ruditapes philippinarum, a finding that bolsters the already-proposed need of a taxonomic revision. We also found a quite low genetic variability across the examined samples, with few SPs and little variability of the sequences flanking the control region (Largest Unassigned Regions (LURs). Strikingly, although we found low nucleotide variability along the entire mitochondrial genome, we observed high levels of length polymorphism in the LUR due to CNV of tandem repeats, and even a LUR length heteroplasmy in two samples. It is not clear if the lack of genetic variability in the mitochondrial genome of Ruditapes decussatus is a cause or an effect of the ongoing replacement of Ruditapes decussatus with the invasive Ruditapes philippinarum, and more analyses, especially on nuclear sequences, are required to assess this point.

Dataset Information

The Ashtamudi Lake short-neck clam: re-assigned to the genus Marcia H. Adams & A. Adams, 1857 (Bivalvia, Veneridae).

Publications

The Ashtamudi Lake short-neck clam: re-assigned to the genus <i>Marcia</i> H. Adams & A. Adams, 1857 (Bivalvia, Veneridae).

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