Dataset Information

Ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations.

ABSTRACT: Environmental DNA (eDNA) metabarcoding is becoming a core tool in ecology and conservation biology, and is being used in a growing number of education, biodiversity monitoring, and public outreach programs in which professional research scientists engage community partners in primary research. Results from eDNA analyses can engage and educate natural resource managers, students, community scientists, and naturalists, but without significant training in bioinformatics, it can be difficult for this diverse audience to interact with eDNA results. Here we present the R package ranacapa, at the core of which is a Shiny web app that helps perform exploratory biodiversity analyses and visualizations of eDNA results. The app requires a taxonomy-by-sample matrix and a simple metadata file with descriptive information about each sample. The app enables users to explore the data with interactive figures and presents results from simple community ecology analyses. We demonstrate the value of ranacapa to two groups of community partners engaging with eDNA metabarcoding results.

SUBMITTER: Kandlikar GS

PROVIDER: S-EPMC6305237 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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Publications

ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations.

Kandlikar Gaurav S GS Gold Zachary J ZJ Cowen Madeline C MC Meyer Rachel S RS Freise Amanda C AC Kraft Nathan J B NJB Moberg-Parker Jordan J Sprague Joshua J Kushner David J DJ Curd Emily E EE

F1000Research 20181101

Environmental DNA (eDNA) metabarcoding is becoming a core tool in ecology and conservation biology, and is being used in a growing number of education, biodiversity monitoring, and public outreach programs in which professional research scientists engage community partners in primary research. Results from eDNA analyses can engage and educate natural resource managers, students, community scientists, and naturalists, but without significant training in bioinformatics, it can be difficult for thi ...[more]

PMID: 30613396

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Dataset Information

Ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations.

Publications

ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations.

Similar Datasets

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