TNF-? gene polymorphisms: association with age-related macular degeneration in Russian population.

ABSTRACT: AIM:To study polymorphisms in promotor regions of tumor necrosis factor (TNF)-? TNF-863A/C (rs1800630), TNF-308A/G (rs1800629), and TNF-238A/G (rs361525) in patients with age-related macular degeneration (AMD) and associations of complex TNF-? genotypes with AMD. METHODS:One hundred and two patients (82 women, 20 men; mean age 64.2±1.2y) with AMD and 100 healthy age- and sex-matched controls (82 women, 18 men; 60±1.4y) were included in the study. All subjects were Caucasian, all subjects and their parents were inhabitants of Russia. Genomic DNA was obtained from EDTA-preserved blood using the standard phenol-chloroform method. Polymorphisms were detected by polymerase chain reaction followed by the restriction fragment length polymorphism method. The following TNF-? genotypes were studied: TNF-?-238 AA, GA, GG, TNF-?-308 AA, GA, GG, TNF-?-863 AA, CA, CC. RESULTS:Differences in TNF-?-863 and TNF-?-238 genotypes frequencies in patients with AMD and healthy controls were not found. The distribution of TNF-?-308 AA and TNF-?-308 GA genotypes was significantly different between the studied group and the controls [odds ratios (OR) =0.22, P=0.0287 and OR=2.91, P=0.0063, respectively]. TNF-863CC/TNF-308GA and TNF-308GA/TNF-238GG genotypes were associated with the increased risk of AMD (OR=2.48, P=0.0332 and OR=2.51, P=0.0187, respectively). Five genotypes combinations appeared to be protective. CONCLUSION:In the present study, single nucleotide polymorphisms and complex polymorphisms of one of the key inflammatory cytokines TNF-?, and a number of significant associations of these polymorphisms with AMD in Russian population have been shown. Complex analysis of genotypes could be important in AMD risk factors detection and studying pathogenesis.

SUBMITTER: Chernykh V 

PROVIDER: S-EPMC6326924 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature