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Proteome and Phosphoproteome Analysis in TNF Long Term-Exposed Primary Human Monocytes.


ABSTRACT: To better understand the inflammation-associated mechanisms modulating and terminating tumor necrosis factor (TNF-)induced signal transduction and the development of TNF tolerance, we analyzed both the proteome and the phosphoproteome in TNF long term-incubated (i.e., 48 h) primary human monocytes using liquid chromatography-mass spectrometry. Our analyses revealed the presence of a defined set of proteins characterized by reproducible changes in expression and phosphorylation patterns in long term TNF-treated samples. In total, 148 proteins and 569 phosphopeptides were significantly regulated (103 proteins increased, 45 proteins decreased; 377 peptides with increased and 192 peptides with decreased phosphorylation). A variety of these proteins are associated with the non-canonical nuclear factor ?B (NF-?B) pathway (nuclear factor ?B (NFKB) 2, v-rel reticuloendotheliosis viral oncogene homolog (REL) B, indolamin-2,3-dioxygenase (IDO), kynureninase (KYNU)) or involved in the negative regulation of the canonical NF-?B system. Within the phosphopeptides, binding motifs for specific kinases were identified. Glycogen synthase kinase (GSK) 3 proved to be a promising candidate, since it targets NF-?B inhibiting factors, such as CCAAT/enhancer binding protein (C/EBP) ?. Our experiments demonstrate that both proteome and phosphoproteome analysis can be effectively applied to study protein/phosphorylation patterns of primary monocytes. These results provide new regulatory candidates and evidence for a complex network of specific but synergistically acting/cooperating mechanisms enabling the affected cells to resist sustained TNF exposure and resulting in the resolution of inflammation.

SUBMITTER: Welz B 

PROVIDER: S-EPMC6429050 | biostudies-literature | 2019 Mar

REPOSITORIES: biostudies-literature

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Proteome and Phosphoproteome Analysis in TNF Long Term-Exposed Primary Human Monocytes.

Welz Bastian B   Bikker Rolf R   Junemann Johannes J   Christmann Martin M   Neumann Konstantin K   Weber Mareike M   Hoffmeister Leonie L   Preuß Katharina K   Pich Andreas A   Huber René R   Brand Korbinian K  

International journal of molecular sciences 20190312 5


To better understand the inflammation-associated mechanisms modulating and terminating tumor necrosis factor (TNF-)induced signal transduction and the development of TNF tolerance, we analyzed both the proteome and the phosphoproteome in TNF long term-incubated (i.e., 48 h) primary human monocytes using liquid chromatography-mass spectrometry. Our analyses revealed the presence of a defined set of proteins characterized by reproducible changes in expression and phosphorylation patterns in long t  ...[more]

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