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ABSTRACT: Objectives
The ability to stratify a patient's risk of metastasis and survival permits more refined care. A proof of principle study was undertaken to investigate the relationship between single nucleotide polymorphisms (SNPs) in literature based candidate cancer genes and the risk of nodal metastasis and clinical outcome in endometrioid endometrial cancer (EEC) patients.Methods
Surgically-staged EEC patients from the Gynecologic Oncology Group or Washington University School of Medicine with germline DNA available were eligible. Fifty-four genes represented by 384 SNPs, were evaluated by Illumina Custom GoldenGate array. Association with lymph node metastases was the primary outcome. Progression-free survival (PFS) and overall survival (OS) was also evaluated.Results
361 SNPs with high quality genotype data were evaluated in 337 patients with outcome data. Five SNPs in CXCR2 had an odds ratio (OR) between 0.68 and 0.70 (p-value ≤ 0.025). The A allele rs946486 in ABL had an OR of 1.5 (p-value = 0.01) for metastasis. The G allele in rs7795743 in EGFR had an OR for metastasis of 0.68 (p-value = 0.02) and hazard ratio (HR) for progression of 0.66 (p-value = 0.004). Importantly, no SNP met genome wide significance after adjusting for multiple test correcting and clinical covariates. The A allele in rs2159359 SNP in NME1 and the G allele in rs13222385 in EGFR were associated with worse OS. Both exhibited genome wide significance; rs13222385 remained significant after adjusting for prognostic clinical variables.Conclusion
SNPs in cancer genes including rs2159359 SNP in NME1 and rs13222385 in EGFR may stratify risk in EEC and are prioritized for further investigation.
SUBMITTER: Brooks RA
PROVIDER: S-EPMC6486855 | biostudies-literature | 2019 May
REPOSITORIES: biostudies-literature
Brooks Rebecca A RA Tritchler David S DS Darcy Kathleen M KM Lankes Heather A HA Salani Ritu R Sperduto Paul P Guntupalli Saketh S DiSilvestro Paul P Kesterson Joshua J Olawaiye Alexander B AB Moxley Katherine K Waggoner Steven S Santin Alessandro A Rader Janet S JS Kizer Nora T NT Thaker Premal H PH Powell Matthew A MA Mutch David G DG Birrer Michael J MJ Goodfellow Paul J PJ
Gynecologic oncology 20190228 2
<h4>Objectives</h4>The ability to stratify a patient's risk of metastasis and survival permits more refined care. A proof of principle study was undertaken to investigate the relationship between single nucleotide polymorphisms (SNPs) in literature based candidate cancer genes and the risk of nodal metastasis and clinical outcome in endometrioid endometrial cancer (EEC) patients.<h4>Methods</h4>Surgically-staged EEC patients from the Gynecologic Oncology Group or Washington University School of ...[more]