Dataset Information

Deep residual network for off-resonance artifact correction with application to pediatric body MRA with 3D cones.

ABSTRACT: PURPOSE:To enable rapid imaging with a scan time-efficient 3D cones trajectory with a deep-learning off-resonance artifact correction technique. METHODS:A residual convolutional neural network to correct off-resonance artifacts (Off-ResNet) was trained with a prospective study of pediatric MRA exams. Each exam acquired a short readout scan (1.18 ms ± 0.38) and a long readout scan (3.35 ms ± 0.74) at 3 T. Short readout scans, with longer scan times but negligible off-resonance blurring, were used as reference images and augmented with additional off-resonance for supervised training examples. Long readout scans, with greater off-resonance artifacts but shorter scan time, were corrected by autofocus and Off-ResNet and compared with short readout scans by normalized RMS error, structural similarity index, and peak SNR. Scans were also compared by scoring on 8 anatomical features by two radiologists, using analysis of variance with post hoc Tukey's test and two one-sided t-tests. Reader agreement was determined with intraclass correlation. RESULTS:The total scan time for long readout scans was on average 59.3% shorter than short readout scans. Images from Off-ResNet had superior normalized RMS error, structural similarity index, and peak SNR compared with uncorrected images across ±1 kHz off-resonance (P < .01). The proposed method had superior normalized RMS error over -677 Hz to +1 kHz and superior structural similarity index and peak SNR over ±1 kHz compared with autofocus (P < .01). Radiologic scoring demonstrated that long readout scans corrected with Off-ResNet were noninferior to short readout scans (P < .05). CONCLUSION:The proposed method can correct off-resonance artifacts from rapid long-readout 3D cones scans to a noninferior image quality compared with diagnostically standard short readout scans.

SUBMITTER: Zeng DY

PROVIDER: S-EPMC6626585 | biostudies-literature | 2019 Oct

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Deep residual network for off-resonance artifact correction with application to pediatric body MRA with 3D cones.

Zeng David Y DY Shaikh Jamil J Holmes Signy S Brunsing Ryan L RL Pauly John M JM Nishimura Dwight G DG Vasanawala Shreyas S SS Cheng Joseph Y JY

Magnetic resonance in medicine 20190522 4

<h4>Purpose</h4>To enable rapid imaging with a scan time-efficient 3D cones trajectory with a deep-learning off-resonance artifact correction technique.<h4>Methods</h4>A residual convolutional neural network to correct off-resonance artifacts (Off-ResNet) was trained with a prospective study of pediatric MRA exams. Each exam acquired a short readout scan (1.18 ms ± 0.38) and a long readout scan (3.35 ms ± 0.74) at 3 T. Short readout scans, with longer scan times but negligible off-resonance blur ...[more]

PMID: 31115936

Similar Datasets

Project description:PurposeThe purpose of this work was twofold: (a) To provide a robust and accurate method for image segmentation of dedicated breast CT (bCT) volume data sets, and (b) to improve Hounsfield unit (HU) accuracy in bCT by means of a postprocessing method that uses the segmented images to correct for the low-frequency shading artifacts in reconstructed images.MethodsA sequential and iterative application of image segmentation and low-order polynomial fitting to bCT volume data sets was used in the interleaved correction (IC) method. Image segmentation was performed through a deep convolutional neural network (CNN) with a modified U-Net architecture. A total of 45 621 coronal bCT images from 111 patient volume data sets were segmented (using a previously published segmentation algorithm) and used for neural network training, validation, and testing. All patient data sets were selected from scans performed on four different prototype breast CT systems. The adipose voxels for each patient volume data set, segmented using the proposed CNN, were then fit to a three-dimensional low-order polynomial. The polynomial fit was subsequently used to correct for the shading artifacts introduced by scatter and beam hardening in a method termed "flat fielding." An interleaved utilization of image segmentation and flat fielding was repeated until a convergence criterion was satisfied. Mathematical and physical phantom studies were conducted to evaluate the dependence of the proposed algorithm on breast size and the distribution of fibroglandular tissue. In addition, a subset of patient scans (not used in the CNN training, testing or validation) were used to investigate the accuracy of the IC method across different scanner designs and beam qualities.ResultsThe IC method resulted in an accurate classification of different tissue types with an average Dice similarity coefficient > 95%, precision > 97%, recall > 95%, and F1-score > 96% across all tissue types. The flat fielding correction of bCT images resulted in a significant reduction in either cupping or capping artifacts in both mathematical and physical phantom studies as measured by the integral nonuniformity metric with an average reduction of 71% for cupping and 30% for capping across different phantom sizes, and the Uniformity Index with an average reduction of 53% for cupping and 34% for capping.ConclusionThe validation studies demonstrated that the IC method improves Hounsfield Units (HU) accuracy and effectively corrects for shading artifacts caused by scatter contamination and beam hardening. The postprocessing approach described herein is relevant to the broad scope of bCT devices and does not require any modification in hardware or existing scan protocols. The trained CNN parameters and network architecture are available for interested users.

Dataset Information

Deep residual network for off-resonance artifact correction with application to pediatric body MRA with 3D cones.

Publications

Deep residual network for off-resonance artifact correction with application to pediatric body MRA with 3D cones.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets