Dataset Information

Validation of Deep Learning-Based Artifact Correction on Synthetic FLAIR Images in a Different Scanning Environment.

ABSTRACT: We investigated the capability of a trained deep learning (DL) model with a convolutional neural network (CNN) in a different scanning environment in terms of ameliorating the quality of synthetic fluid-attenuated inversion recovery (FLAIR) images. The acquired data of 319 patients obtained from the retrospective review were used as test sets for the already trained DL model to correct the synthetic FLAIR images. Quantitative analyses were performed for native synthetic FLAIR and DL-FLAIR images against conventional FLAIR images. Two neuroradiologists assessed the quality and artifact degree of the native synthetic FLAIR and DL-FLAIR images. The quantitative parameters showed significant improvement on DL-FLAIR in all individual tissue segments and total intracranial tissues than on the native synthetic FLAIR (p < 0.0001). DL-FLAIR images showed improved image quality with fewer artifacts than the native synthetic FLAIR images (p < 0.0001). There was no significant difference in the preservation of the periventricular white matter hyperintensities and lesion conspicuity between the two FLAIR image sets (p = 0.217). The quality of synthetic FLAIR images was improved through artifact correction using the trained DL model on a different scan environment. DL-based correction can be a promising solution for ameliorating the quality of synthetic FLAIR images to broaden the clinical use of synthetic magnetic resonance imaging (MRI).

SUBMITTER: Ryu KH

PROVIDER: S-EPMC7074150 | biostudies-literature | 2020 Jan

REPOSITORIES: biostudies-literature

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Validation of Deep Learning-Based Artifact Correction on Synthetic FLAIR Images in a Different Scanning Environment.

Ryu Kyeong Hwa KH Baek Hye Jin HJ Gho Sung-Min SM Ryu Kanghyun K Kim Dong-Hyun DH Park Sung Eun SE Ha Ji Young JY Cho Soo Buem SB Lee Joon Sung JS

Journal of clinical medicine 20200129 2

We investigated the capability of a trained deep learning (DL) model with a convolutional neural network (CNN) in a different scanning environment in terms of ameliorating the quality of synthetic fluid-attenuated inversion recovery (FLAIR) images. The acquired data of 319 patients obtained from the retrospective review were used as test sets for the already trained DL model to correct the synthetic FLAIR images. Quantitative analyses were performed for native synthetic FLAIR and DL-FLAIR images ...[more]

PMID: 32013069

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Project description:PurposeThe purpose of this work was twofold: (a) To provide a robust and accurate method for image segmentation of dedicated breast CT (bCT) volume data sets, and (b) to improve Hounsfield unit (HU) accuracy in bCT by means of a postprocessing method that uses the segmented images to correct for the low-frequency shading artifacts in reconstructed images.MethodsA sequential and iterative application of image segmentation and low-order polynomial fitting to bCT volume data sets was used in the interleaved correction (IC) method. Image segmentation was performed through a deep convolutional neural network (CNN) with a modified U-Net architecture. A total of 45 621 coronal bCT images from 111 patient volume data sets were segmented (using a previously published segmentation algorithm) and used for neural network training, validation, and testing. All patient data sets were selected from scans performed on four different prototype breast CT systems. The adipose voxels for each patient volume data set, segmented using the proposed CNN, were then fit to a three-dimensional low-order polynomial. The polynomial fit was subsequently used to correct for the shading artifacts introduced by scatter and beam hardening in a method termed "flat fielding." An interleaved utilization of image segmentation and flat fielding was repeated until a convergence criterion was satisfied. Mathematical and physical phantom studies were conducted to evaluate the dependence of the proposed algorithm on breast size and the distribution of fibroglandular tissue. In addition, a subset of patient scans (not used in the CNN training, testing or validation) were used to investigate the accuracy of the IC method across different scanner designs and beam qualities.ResultsThe IC method resulted in an accurate classification of different tissue types with an average Dice similarity coefficient > 95%, precision > 97%, recall > 95%, and F1-score > 96% across all tissue types. The flat fielding correction of bCT images resulted in a significant reduction in either cupping or capping artifacts in both mathematical and physical phantom studies as measured by the integral nonuniformity metric with an average reduction of 71% for cupping and 30% for capping across different phantom sizes, and the Uniformity Index with an average reduction of 53% for cupping and 34% for capping.ConclusionThe validation studies demonstrated that the IC method improves Hounsfield Units (HU) accuracy and effectively corrects for shading artifacts caused by scatter contamination and beam hardening. The postprocessing approach described herein is relevant to the broad scope of bCT devices and does not require any modification in hardware or existing scan protocols. The trained CNN parameters and network architecture are available for interested users.

Dataset Information

Validation of Deep Learning-Based Artifact Correction on Synthetic FLAIR Images in a Different Scanning Environment.

Publications

Validation of Deep Learning-Based Artifact Correction on Synthetic FLAIR Images in a Different Scanning Environment.

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