Ontology highlight
ABSTRACT:
SUBMITTER: Pasquali F
PROVIDER: S-EPMC6838873 | biostudies-literature | 2019 Oct
REPOSITORIES: biostudies-literature
Pasquali F F Do Valle I I Palma F F Remondini D D Manfreda G G Castellani G G Hendriksen R S RS De Cesare A A
Heliyon 20191001 10
In this study three DNA extraction procedures, two library preparation protocols and two sequencing platforms were applied to analyse six bacterial cultures and their corresponding DNA obtained as part of a proficiency test. The impact of each variable on sequencing results was assessed using the following parameters: reads quality, assembly and alignment statistics; number of single nucleotide polymorphisms (SNPs), detected applying assembly- and alignment-based strategies; antimicrobial resist ...[more]