Browse
Submit Data
Databases
API
Help

Dataset Information

20 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A quantitative method to decompose SWE differences between regional climate models and reanalysis datasets.

ABSTRACT: The simulation of snow water equivalent (SWE) remains difficult for regional climate models. Accurate SWE simulation depends on complex interacting climate processes such as the intensity and distribution of precipitation, rain-snow partitioning, and radiative fluxes. To identify the driving forces behind SWE difference between model and reanalysis datasets, and guide model improvement, we design a framework to quantitatively decompose the SWE difference contributed from precipitation distribution and magnitude, ablation, temperature and topography biases in regional climate models. We apply this framework within the California Sierra Nevada to four regional climate models from the North American Coordinated Regional Downscaling Experiment (NA-CORDEX) run at three spatial resolutions. Models generally predict less SWE compared to Landsat-Era Sierra Nevada Snow Reanalysis (SNSR) dataset. Unresolved topography associated with model resolution contribute to dry and warm biases in models. Refining resolution from 0.44° to 0.11° improves SWE simulation by 35%. To varying degrees across models, additional difference arises from spatial and elevational distribution of precipitation, cold biases revealed by topographic correction, uncertainties in the rain-snow partitioning threshold, and high ablation biases. This work reveals both positive and negative contributions to snow bias in climate models and provides guidance for future model development to enhance SWE simulation.

SUBMITTER: Xu Y

PROVIDER: S-EPMC6848092 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Comparing regional precipitation and temperature extremes in climate model and reanalysis products.

Project description:A growing field of research aims to characterise the contribution of anthropogenic emissions to the likelihood of extreme weather and climate events. These analyses can be sensitive to the shapes of the tails of simulated distributions. If tails are found to be unrealistically short or long, the anthropogenic signal emerges more or less clearly, respectively, from the noise of possible weather. Here we compare the chance of daily land-surface precipitation and near-surface temperature extremes generated by three Atmospheric Global Climate Models typically used for event attribution, with distributions from six reanalysis products. The likelihoods of extremes are compared for area-averages over grid cell and regional sized spatial domains. Results suggest a bias favouring overly strong attribution estimates for hot and cold events over many regions of Africa and Australia, and a bias favouring overly weak attribution estimates over regions of North America and Asia. For rainfall, results are more sensitive to geographic location. Although the three models show similar results over many regions, they do disagree over others. Equally, results highlight the discrepancy amongst reanalyses products. This emphasises the importance of using multiple reanalysis and/or observation products, as well as multiple models in event attribution studies.

| S-EPMC5351813 | biostudies-literature

Selecting global climate models for regional climate change studies.

Project description:Regional or local climate change modeling studies currently require starting with a global climate model, then downscaling to the region of interest. How should global models be chosen for such studies, and what effect do such choices have? This question is addressed in the context of a regional climate detection and attribution (D&A) study of January-February-March (JFM) temperature over the western U.S. Models are often selected for a regional D&A analysis based on the quality of the simulated regional climate. Accordingly, 42 performance metrics based on seasonal temperature and precipitation, the El Nino/Southern Oscillation (ENSO), and the Pacific Decadal Oscillation are constructed and applied to 21 global models. However, no strong relationship is found between the score of the models on the metrics and results of the D&A analysis. Instead, the importance of having ensembles of runs with enough realizations to reduce the effects of natural internal climate variability is emphasized. Also, the superiority of the multimodel ensemble average (MM) to any 1 individual model, already found in global studies examining the mean climate, is true in this regional study that includes measures of variability as well. Evidence is shown that this superiority is largely caused by the cancellation of offsetting errors in the individual global models. Results with both the MM and models picked randomly confirm the original D&A results of anthropogenically forced JFM temperature changes in the western U.S. Future projections of temperature do not depend on model performance until the 2080s, after which the better performing models show warmer temperatures.

| S-EPMC2689003 | biostudies-literature

Reanalysis datasets outperform other gridded climate products in vegetation change analysis in peripheral conservation areas of Central Asia.

Project description:Global environmental research requires long-term climate data. Yet, meteorological infrastructure is missing in the vast majority of the world's protected areas. Therefore, gridded products are frequently used as the only available climate data source in peripheral regions. However, associated evaluations are commonly biased towards well observed areas and consequently, station-based datasets. As evaluations on vegetation monitoring abilities are lacking for regions with poor data availability, we analyzed the potential of several state-of-the-art climate datasets (CHIRPS, CRU, ERA5-Land, GPCC-Monitoring-Product, IMERG-GPM, MERRA-2, MODIS-MOD10A1) for assessing NDVI anomalies (MODIS-MOD13Q1) in two particularly suitable remote conservation areas. We calculated anomalies of 156 climate variables and seasonal periods during 2001-2018, correlated these with vegetation anomalies while taking the multiple comparison problem into consideration, and computed their spatial performance to derive suitable parameters. Our results showed that four datasets (MERRA-2, ERA5-Land, MOD10A1, CRU) were suitable for vegetation analysis in both regions, by showing significant correlations controlled at a false discovery rate < 5% and in more than half of the analyzed areas. Cross-validated variable selection and importance assessment based on the Boruta algorithm indicated high importance of the reanalysis datasets ERA5-Land and MERRA-2 in both areas but higher differences and variability between the regions with all other products. CHIRPS, GPCC and the bias-corrected version of MERRA-2 were unsuitable and not important in both regions. We provide evidence that reanalysis datasets are most suitable for spatiotemporally consistent environmental analysis whereas gauge- or satellite-based products and their combinations are highly variable and may not be applicable in peripheral areas.

| S-EPMC7775429 | biostudies-literature

Consistent Reanalysis of Genome-wide Imprinting Studies in Plants Using Generalized Linear Models Increases Concordance across Datasets.

Project description:Genomic imprinting leads to different expression levels of maternally and paternally derived alleles. Over the last years, major progress has been made in identifying novel imprinted candidate genes in plants, owing to affordable next-generation sequencing technologies. However, reports on sequencing the transcriptome of hybrid F1 seed tissues strongly disagree about how many and which genes are imprinted. This raises questions about the relative impact of biological, environmental, technical, and analytic differences or biases. Here, we adopt a statistical approach, frequently used in RNA-seq data analysis, which properly models count overdispersion and considers replicate information of reciprocal crosses. We show that our statistical pipeline outperforms other methods in identifying imprinted genes in simulated and real data. Accordingly, reanalysis of genome-wide imprinting studies in Arabidopsis and maize shows that, at least for Arabidopsis, an increased agreement across datasets could be observed. For maize, however, consistent reanalysis did not yield a larger overlap between the datasets. This suggests that the discrepancy across publications might be partially due to different analysis pipelines but that technical, biological, and environmental factors underlie much of the discrepancy between datasets. Finally, we show that the set of genes that can be characterized regarding allelic bias by all studies with minimal confidence is small (~8,000/27,416 genes for Arabidopsis and ~12,000/39,469 for maize). In conclusion, we propose to use biologically replicated reciprocal crosses, high sequence coverage, and a generalized linear model approach to identify differentially expressed alleles in developing seeds.

| S-EPMC6362150 | biostudies-literature

Regional disparities and seasonal differences in climate risk to rice labour.

Project description:The 880 million agricultural workers of the world are especially vulnerable to increasing heat stress due to climate change, affecting the health of individuals and reducing labour productivity. In this study, we focus on rice harvests across Asia and estimate the future impact on labour productivity by considering changes in climate at the time of the annual harvest. During these specific times of the year, heat stress is often high compared to the rest of the year. Examining climate simulations of the Coupled Model Intercomparison Project 6 (CMIP6), we identified that labour productivity metrics for the rice harvest, based on local wet-bulb globe temperature, are strongly correlated with global mean near-surface air temperature in the long term (p ≪ 0.01, R 2 > 0.98 in all models). Limiting global warming to 1.5 °C rather than 2.0 °C prevents a clear reduction in labour capacity of 1% across all Asia and 2% across Southeast Asia, affecting the livelihoods of around 100 million people. Due to differences in mechanization between and within countries, we find that rice labour is especially vulnerable in Indonesia, the Philippines, Bangladesh, and the Indian states of West Bengal and Kerala. Our results highlight the regional disparities and importance in considering seasonal differences in the estimation of the effect of climate change on labour productivity and occupational heat-stress.

| S-EPMC8592055 | biostudies-literature

A novel statistical method for quantitative comparison of multiple ChIP-seq datasets.

Project description:MotivationChIP-seq is a powerful technology to measure the protein binding or histone modification strength in the whole genome scale. Although there are a number of methods available for single ChIP-seq data analysis (e.g. 'peak detection'), rigorous statistical method for quantitative comparison of multiple ChIP-seq datasets with the considerations of data from control experiment, signal to noise ratios, biological variations and multiple-factor experimental designs is under-developed.ResultsIn this work, we develop a statistical method to perform quantitative comparison of multiple ChIP-seq datasets and detect genomic regions showing differential protein binding or histone modification. We first detect peaks from all datasets and then union them to form a single set of candidate regions. The read counts from IP experiment at the candidate regions are assumed to follow Poisson distribution. The underlying Poisson rates are modeled as an experiment-specific function of artifacts and biological signals. We then obtain the estimated biological signals and compare them through the hypothesis testing procedure in a linear model framework. Simulations and real data analyses demonstrate that the proposed method provides more accurate and robust results compared with existing ones.Availability and implementationAn R software package ChIPComp is freely available at http://web1.sph.emory.edu/users/hwu30/software/ChIPComp.html.

| S-EPMC4542775 | biostudies-literature

Regional differences in prediction models of lung function in Germany.

Project description:BackgroundLittle is known about the influencing potential of specific characteristics on lung function in different populations. The aim of this analysis was to determine whether lung function determinants differ between subpopulations within Germany and whether prediction equations developed for one subpopulation are also adequate for another subpopulation.MethodsWithin three studies (KORA C, SHIP-I, ECRHS-I) in different areas of Germany 4059 adults performed lung function tests. The available data consisted of forced expiratory volume in one second, forced vital capacity and peak expiratory flow rate. For each study multivariate regression models were developed to predict lung function and Bland-Altman plots were established to evaluate the agreement between predicted and measured values.ResultsThe final regression equations for FEV1 and FVC showed adjusted r-square values between 0.65 and 0.75, and for PEF they were between 0.46 and 0.61. In all studies gender, age, height and pack-years were significant determinants, each with a similar effect size. Regarding other predictors there were some, although not statistically significant, differences between the studies. Bland-Altman plots indicated that the regression models for each individual study adequately predict medium (i.e. normal) but not extremely high or low lung function values in the whole study population.ConclusionsSimple models with gender, age and height explain a substantial part of lung function variance whereas further determinants add less than 5% to the total explained r-squared, at least for FEV1 and FVC. Thus, for different adult subpopulations of Germany one simple model for each lung function measures is still sufficient.

| S-EPMC2873930 | biostudies-literature

Does temperature nudging overwhelm aerosol radiative effects in regional integrated climate models?

Project description:Nudging (data assimilation) is used in many regional integrated meteorology-air quality models to reduce biases in simulated climatology. However, in such modeling systems, temperature changes due to nudging could compete with temperature changes induced by radiatively active and hygroscopic short-lived tracers leading to two interesting dilemmas: when nudging is continuously applied, what are the relative sizes of these two radiative forces at regional and local scales? How do these two forces present in the free atmosphere differ from those present at the surface? This work studies these two issues by converting temperature changes due to nudging into pseudo radiative effects (PRE) at the surface (PRE_sfc), in troposphere (PRE_atm), and at the top of atmosphere (PRE_toa), and comparing PRE with the reported aerosol radiative effects (ARE). Results show that the domain-averaged PRE_sfc is smaller than ARE_sfc estimated in previous studies and this work, but could be significantly larger than ARE_sfc at local scales. PRE_atm is also much smaller than ARE_atm. These results indicate that appropriate nudging methodology could be applied to the integrated models to study aerosol radiative effects at continental/regional scales, but it should be treated with caution for local scale applications.

| S-EPMC6104850 | biostudies-literature

Local climate zones classification method from Copernicus land monitoring service datasets: An ArcGIS-based toolbox.

Project description:Local Climate Zones (LCZ) have become a worldwide standard for identifying land cover classes, according to their climate-relevant morphological parameters. The LCZ's are mostly used to evaluate urban climate performance, particularly the relationship between the urban heat island effect (UHI) and the characteristics of the built-up environment. The World Urban Database and Access Portal Tools (WUDAPT) has provided a supervised LCZ classification method based only on moderate resolution free satellite imagery, mostly Landsat 7 or 8 (30 m pixel size, in the visible spectrum brands); however, its' results are less accurate for European cities. Conversely, alternative geographic information system (GIS)-based methods developed so far require information that is hardly available to all, such as building footprints or heights. Here, the ArcGIS based LCZ from Copernicus Toolbox (LCZC) provides an alternative classification method that uses only freely accessible information from the Copernicus Land Monitoring Service (CLMS), being possible to replicate it in 800 European urban locations. The method combines Urban Atlas (UA) and Corine Land Cover (CLC) with Tree Cover Density, Dominant Leaf Type and Grassland information, to produce a higher-resolution baseline shapefile that is classified according to each feature's dominant characteristics. The LCZC toolbox output is a LCZ raster map. It has been validated in five European cities: Athens, Barcelona, Lisbon, Marseille, and Naples.•The LCZC toolbox provides an alternative LCZ GIS-based classification, based on freely accessible CLMS datasets.•The use of CLMS shapefile higher-resolution inputs, particularly the UA and CLC datasets, ensures an output LCZ map that has greater detail and higher accuracy.•The availability of CLMS information in 800 European urban areas guarantees that the method can be replicated in those locations.

| S-EPMC7718173 | biostudies-literature

Regional differences.

Project description:The skin is a complex landscape containing regions in which hair follicles exhibit different types of behavior.

| S-EPMC5551282 | biostudies-other