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ABSTRACT:
SUBMITTER: Guterres H
PROVIDER: S-EPMC6884403 | biostudies-literature | 2019 Nov
REPOSITORIES: biostudies-literature
Guterres Hugo H Lee Hui Sun HS Im Wonpil W
Journal of chemical theory and computation 20191014 11
Accurate modeling of ligand-binding-site structures plays a critical role in structure-based virtual screening. However, the structures of the ligand-binding site in most predicted protein models are generally of low quality and need refinements. In this work, we present a ligand-binding-site structure refinement protocol using molecular dynamics simulation with restraints derived from predicted binding site templates. Our benchmark validation shows great performance for 40 diverse sets of prote ...[more]