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Comparative genetic architectures of schizophrenia in East Asian and European populations.


ABSTRACT: Schizophrenia is a debilitating psychiatric disorder with approximately 1% lifetime risk globally. Large-scale schizophrenia genetic studies have reported primarily on European ancestry samples, potentially missing important biological insights. Here, we report the largest study to date of East Asian participants (22,778 schizophrenia cases and 35,362 controls), identifying 21 genome-wide-significant associations in 19 genetic loci. Common genetic variants that confer risk for schizophrenia have highly similar effects between East Asian and European ancestries (genetic correlation?=?0.98?±?0.03), indicating that the genetic basis of schizophrenia and its biology are broadly shared across populations. A fixed-effect meta-analysis including individuals from East Asian and European ancestries identified 208 significant associations in 176 genetic loci (53 novel). Trans-ancestry fine-mapping reduced the sets of candidate causal variants in 44 loci. Polygenic risk scores had reduced performance when transferred across ancestries, highlighting the importance of including sufficient samples of major ancestral groups to ensure their generalizability across populations.

SUBMITTER: Lam M 

PROVIDER: S-EPMC6885121 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

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Comparative genetic architectures of schizophrenia in East Asian and European populations.

Lam Max M   Chen Chia-Yen CY   Li Zhiqiang Z   Martin Alicia R AR   Bryois Julien J   Ma Xixian X   Gaspar Helena H   Ikeda Masashi M   Benyamin Beben B   Brown Brielin C BC   Liu Ruize R   Zhou Wei W   Guan Lili L   Kamatani Yoichiro Y   Kim Sung-Wan SW   Kubo Michiaki M   Kusumawardhani Agung A A A AAAA   Liu Chih-Min CM   Ma Hong H   Periyasamy Sathish S   Takahashi Atsushi A   Xu Zhida Z   Yu Hao H   Zhu Feng F   Chen Wei J WJ   Faraone Stephen S   Glatt Stephen J SJ   He Lin L   Hyman Steven E SE   Hwu Hai-Gwo HG   McCarroll Steven A SA   Neale Benjamin M BM   Sklar Pamela P   Wildenauer Dieter B DB   Yu Xin X   Zhang Dai D   Mowry Bryan J BJ   Lee Jimmy J   Holmans Peter P   Xu Shuhua S   Sullivan Patrick F PF   Ripke Stephan S   O'Donovan Michael C MC   Daly Mark J MJ   Qin Shengying S   Sham Pak P   Iwata Nakao N   Hong Kyung S KS   Schwab Sibylle G SG   Yue Weihua W   Tsuang Ming M   Liu Jianjun J   Ma Xiancang X   Kahn René S RS   Shi Yongyong Y   Huang Hailiang H  

Nature genetics 20191118 12


Schizophrenia is a debilitating psychiatric disorder with approximately 1% lifetime risk globally. Large-scale schizophrenia genetic studies have reported primarily on European ancestry samples, potentially missing important biological insights. Here, we report the largest study to date of East Asian participants (22,778 schizophrenia cases and 35,362 controls), identifying 21 genome-wide-significant associations in 19 genetic loci. Common genetic variants that confer risk for schizophrenia have  ...[more]

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