A submerged 7000-year-old village and seawall demonstrate earliest known coastal defence against sea-level rise.
Ontology highlight
ABSTRACT:
SUBMITTER: Galili E
PROVIDER: S-EPMC6919572 | biostudies-literature |
REPOSITORIES: biostudies-literature
Similar Datasets
Project description:Xenoposeidon proneneukos is a sauropod dinosaur from the Early Cretaceous Hastings Group of England. It is represented by a single partial dorsal vertebra, NHMUK PV R2095, which consists of the centrum and the base of a tall neural arch. Despite its fragmentary nature, it is recognisably distinct from all other sauropods, and is here diagnosed with five unique characters. One character previously considered unique is here recognised as shared with the rebbachisaurid diplodocoid Rebbachisaurus garasbae from the mid-Cretaceous of Morocco: an 'M'-shaped arrangement of laminae on the lateral face of the neural arch. Following the more completely preserved R. garasbae, these laminae are now interpreted as ACPL and lateral CPRL, which intersect anteriorly; and PCDL and CPOL, which intersect posteriorly. Similar arrangements are also seen in some other rebbachisaurid specimens (though not all, possibly due to serial variation), but never in non-rebbachisaurid sauropods. Xenoposeidon is therefore referred to Rebbachisauridae. Due to its inferred elevated parapophysis, the holotype vertebra is considered a mid-posterior dorsal despite its elongate centrum. Since Xenoposeidon is from the Berriasian-Valanginian (earliest Cretaceous) Ashdown Formation of the Wealden Supergroup of southern England, it is the earliest known rebbachisaurid by some 10 million years. Electronic 3D models were invaluable in determining Xenoposeidon's true affinities: descriptions of complex bones such as sauropod vertebrae should always provide them where possible.
| S-EPMC6037143 | biostudies-literature
Project description:Embryonic lethality is a recognized phenotypic expression of individual gene mutations in model organisms. However, identifying embryonic lethal genes in humans is challenging, especially when the phenotype is manifested at the preimplantation stage.In an ongoing effort to exploit the highly consanguineous nature of the Saudi population to catalog recessively acting embryonic lethal genes in humans, we have identified two families with a female-limited infertility phenotype. Using autozygosity mapping and whole exome sequencing, we map this phenotype to a single mutation in TLE6, a maternal effect gene that encodes a member of the subcortical maternal complex in mammalian oocytes. Consistent with the published phenotype of mouse Tle6 mutants, embryos from female patients who are homozygous for the TLE6 mutation fail to undergo early cleavage, with resulting sterility. The human mutation abrogates TLE6 phosphorylation, a step that is reported to be critical for the PKA-mediated progression of oocyte meiosis II. Furthermore, the TLE6 mutation impairs its binding to components of the subcortical maternal complex.In this first report of a human defect in a member of the subcortical maternal subcritical maternal complex, we show that the TLE6 mutation is gender-specific and leads to the earliest known human embryonic lethality phenotype.
| S-EPMC4634911 | biostudies-literature
Project description:Brachiosauridae is a clade of titanosauriform sauropod dinosaurs that includes the well-known Late Jurassic taxa Brachiosaurus and Giraffatitan. However, there is disagreement over the brachiosaurid affinities of most other taxa, and little consensus regarding the clade's composition or inter-relationships. An unnamed partial sauropod skeleton was collected from middle-late Oxfordian (early Late Jurassic) deposits in Damparis, in the Jura department of eastern France, in 1934. Since its brief description in 1943, this specimen has been informally known in the literature as the 'Damparis sauropod' and 'French Bothriospondylus', and has been considered a brachiosaurid by most authors. If correctly identified, this would make the specimen the earliest known titanosauriform. Coupled with its relatively complete nature and the rarity of Oxfordian sauropod remains in general, this is an important specimen for understanding the early evolution of Titanosauriformes. Full preparation and description of this specimen, known from teeth, vertebrae and most of the appendicular skeleton of a single individual, recognises it as a distinct taxon: Vouivria damparisensis gen. et sp. nov. Phylogenetic analysis of a data matrix comprising 77 taxa (including all putative brachiosaurids) scored for 416 characters recovers a fairly well resolved Brachiosauridae. Vouivria is a basal brachiosaurid, confirming its status as the stratigraphically oldest known titanosauriform. Brachiosauridae consists of a paraphyletic array of Late Jurassic forms, with Europasaurus, Vouivria and Brachiosaurus recovered as successively more nested genera that lie outside of a clade comprising (Giraffatitan + Sonorasaurus) + (Lusotitan + (Cedarosaurus + Venenosaurus)). Abydosaurus forms an unresolved polytomy with the latter five taxa. The Early Cretaceous South American sauropod Padillasaurus was previously regarded as a brachiosaurid, but is here placed within Somphospondyli. A recent study contended that a number of characters used in a previous iteration of this data matrix are 'biologically related', and thus should be excluded from phylogenetic analysis. We demonstrate that almost all of these characters show variation between taxa, and implementation of sensitivity analyses, in which these characters are excluded, has no effect on tree topology or resolution. We argue that where there is morphological variation, this should be captured, rather than ignored. Unambiguous brachiosaurid remains are known only from the USA, western Europe and Africa, and the clade spanned the Late Jurassic through to the late Albian/early Cenomanian, with the last known occurrences all from the USA. Regardless of whether their absence from the Cretaceous of Europe, as well as other regions entirely, reflects regional extinctions and genuine absences, or sampling artefacts, brachiosaurids appear to have become globally extinct by the earliest Late Cretaceous.
| S-EPMC5417094 | biostudies-literature
Project description:Sea-level rise will radically redefine the coastline of the 21st century. For many coastal regions, projections of global sea-level rise by the year 2100 (e.g., 0.5-2 meters) are comparable in magnitude to today's extreme but short-lived increases in water level due to storms. Thus, the 21st century will see significant changes to coastal flooding regimes (where present-day, extreme-but-rare events become common), which poses a major risk to the safety and sustainability of coastal communities worldwide. So far, estimates of future coastal flooding frequency focus on endpoint scenarios, such as the increase in flooding by 2050 or 2100. Here, we investigate the continuous shift in coastal flooding regimes by quantifying continuous rates of increase in the occurrence of extreme water-level events due to sea-level rise. We find that the odds of exceeding critical water-level thresholds increases exponentially with sea-level rise, meaning that fixed amounts of sea-level rise of only ~1-10 cm in areas with a narrow range of present-day extreme water levels can double the odds of flooding. Combining these growth rates with established sea-level rise projections, we find that the odds of extreme flooding double approximately every 5 years into the future. Further, we find that the present-day 50-year extreme water level (i.e., 2% annual chance of exceedance, based on historical records) will be exceeded annually before 2050 for most (i.e., 70%) of the coastal regions in the United States. Looking even farther into the future, the present-day 50-year extreme water level will be exceeded almost every day during peak tide (i.e., daily mean higher high water) before the end of the 21st century for 90% of the U.S. coast. Our findings underscore the need for immediate planning and adaptation to mitigate the societal impacts of future flooding.
| S-EPMC7162943 | biostudies-literature
Project description:Tetrapod fossil tracks are known from the Middle Devonian (Eifelian at ca. 397 million years ago--MYA), and their earliest bony remains from the Upper Devonian (Frasnian at 375-385 MYA). Tetrapods are now generally considered to have colonized land during the Carboniferous (i.e., after 359 MYA), which is considered to be one of the major events in the history of life. Our analysis on tetrapod evolution was performed using molecular data consisting of 13 proteins from 17 species and different paleontological data. The analysis on the molecular data was performed with the program TreeSAAP and the results were analyzed to see if they had implications on the paleontological data collected. The results have shown that tetrapods evolved from marine environments during times of higher oxygen levels. The change in environmental conditions played a major role in their evolution. According to our analysis this evolution occurred at about 397-416 MYA during the Early Devonian unlike previously thought. This idea is supported by various environmental factors such as sea levels and oxygen rate, and biotic factors such as biodiversity of arthropods and coral reefs. The molecular data also strongly supports lungfish as tetrapod's closest living relative.
| S-EPMC3136505 | biostudies-literature
Project description:Frugivorous birds play an important role in seed dispersal. Alien plant species' seeds are dispersed by local birds in order to establish populations in new habitats. Alien plant species that produce fruits similar to that of native species have the potential to attract local birds, creating new mutualistic systems that are similar to the local ones. In autumn 2018 and 2019, we studied the seed dispersal systems of an alien plant species, Phytolacca americana, and a native species, Cayratia japonica, in a coastal seawall forest. Both plant species' fruit, frugivorous bird foraging behaviors, seed germination rates, and seedling microhabitats were examined to determine whether the alien species had a similar seed dispersal system to that of the native species. Our results showed that P. americana and C. japonica had similar fruit type, color, and ripening period. There was a positive correlation between the percentage rate of fruit ripening and the percentage rate of fruit missing for both plant species, indicating that local frugivorous birds have the potential to sufficiently disperse the alien seeds to enable its spread in the coastal seawall forest (simple linear regression, P. americana: β = 0.863 ± 0.017, R2 adj = 0.978, P < 0.01; C. japonica: β = 0.787 ± 0.034, R2 adj = 0.898, P < 0.01). Eleven bird species consumed the fruits of the alien species or native species during the study period. Similar results were shown across alien and native species in bird foraging behavior (feeding frequency, feeding duration and first stop distance) indicating that a similar seed dispersal relationship had been established between local frugivorous and both plant species. The alien plant had a higher number of fruits carried by birds, suggesting that P. americana had a slightly higher fruit consumption than that of C. japonica (t-test, P < 0.01). Alien plant seedlings grow more abundant in forest gap microhabitat (t-test, P < 0.01). Our results confirmed that bird digestion promotes seed germination success in both plant species. Our study suggests that in a narrow coastal seawall forest, alien plant species can successfully establish their populations by relying on similar seed dispersal systems as the local species.
| S-EPMC8231312 | biostudies-literature
Project description:A partial dinosaur skeleton from the Upper Triassic (Norian) sediments of South Africa is described and named Antetonitrus ingenipes. It provides the first informative look at a basal sauropod that was beginning to show adaptations towards graviportal quadrupedalism such as an elongated forelimb, a modified femoral architecture, a shortened metatarsus and a changed distribution of weight across the foot. These adaptations allowed the clade to produce the largest-ever terrestrial animals. However, A. ingenipes lacked specializations of the hand found in more derived sauropods that indicate it retained the ability to grasp. Antetonitrus is older than the recently described Isanosaurus from Thailand and is the oldest known definitive sauropod.
| S-EPMC1691423 | biostudies-literature
Project description:The staphylococcal qacB-encoding multidrug resistance plasmid pSK156, isolated from a clinical strain dating from 1951, was characterized. Comparison of the regions flanking qacB with other qacA- and qacB-encoding plasmids provided insights into the evolution and dissemination of these multidrug efflux genes and led to the detection of the earliest known copy of the insertion sequence IS257.
| S-EPMC107308 | biostudies-literature
Project description:Synapsids are unique in having developed multirooted teeth and complex occlusions. These innovations evolved in at least two lineages of mammaliamorphs (Tritylodontidae and Mammaliaformes). Triassic fossils demonstrate that close to the origins of mammals, mammaliaform precursors were "experimenting" with tooth structure and function, resulting in novel patterns of occlusion. One of the most surprising examples of such adaptations is present in the haramiyidan clade, which differed from contemporary mammaliaforms in having two rows of cusps on molariform crowns adapted to omnivorous/herbivorous feeding. However, the origin of the multicusped tooth pattern present in haramiyidans has remained enigmatic. Here we describe the earliest-known mandibular fossil of a mammaliaform with double molariform roots and a crown with two rows of cusps from the Late Triassic of Greenland. The crown morphology is intermediate between that of morganucodontans and haramiyidans and suggests the derivation of the multicusped molariforms of haramiyidans from the triconodont molar pattern seen in morganucodontids. Although it is remarkably well documented in the fossil record, the significance of tooth root division in mammaliaforms remains enigmatic. The results of our biomechanical analyses (finite element analysis [FEA]) indicate that teeth with two roots can better withstand stronger mechanical stresses like those resulting from tooth occlusion, than teeth with a single root.
| S-EPMC7604429 | biostudies-literature
Project description:Coastal protection design heights typically consider the superimposed effects of tides, surges, waves, and relative sea-level rise (SLR), neglecting non-linear feedbacks between these forcing factors. Here, we use hydrodynamic modelling and multivariate statistics to show that shallow coastal areas are extremely sensitive to changing non-linear interactions between individual components caused by SLR. As sea-level increases, the depth-limitation of waves relaxes, resulting in waves with larger periods, greater amplitudes, and higher run-up; moreover, depth and frictional changes affect tide, surge, and wave characteristics, altering the relative importance of other risk factors. Consequently, sea-level driven changes in wave characteristics, and to a lesser extent, tides, amplify the resulting design heights by an average of 48-56%, relative to design changes caused by SLR alone. Since many of the world's most vulnerable coastlines are impacted by depth-limited waves, our results suggest that the overall influence of SLR may be greatly underestimated in many regions.
| S-EPMC5216410 | biostudies-literature