Dataset Information

Microbial chemolithotrophy mediates oxidative weathering of granitic bedrock.

ABSTRACT: The flux of solutes from the chemical weathering of the continental crust supplies a steady supply of essential nutrients necessary for the maintenance of Earth's biosphere. Promotion of weathering by microorganisms is a well-documented phenomenon and is most often attributed to heterotrophic microbial metabolism for the purposes of nutrient acquisition. Here, we demonstrate the role of chemolithotrophic ferrous iron [Fe(II)]-oxidizing bacteria in biogeochemical weathering of subsurface Fe(II)-silicate minerals at the Luquillo Critical Zone Observatory in Puerto Rico. Under chemolithotrophic growth conditions, mineral-derived Fe(II) in the Rio Blanco Quartz Diorite served as the primary energy source for microbial growth. An enrichment in homologs to gene clusters involved in extracellular electron transfer was associated with dramatically accelerated rates of mineral oxidation and adenosine triphosphate generation relative to sterile diorite suspensions. Transmission electron microscopy and energy-dispersive spectroscopy revealed the accumulation of nanoparticulate Fe-oxyhydroxides on mineral surfaces only under biotic conditions. Microbially oxidized quartz diorite showed greater susceptibility to proton-promoted dissolution, which has important implications for weathering reactions in situ. Collectively, our results suggest that chemolithotrophic Fe(II)-oxidizing bacteria are likely contributors in the transformation of rock to regolith.

SUBMITTER: Napieralski SA

PROVIDER: S-EPMC6936594 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

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Microbial chemolithotrophy mediates oxidative weathering of granitic bedrock.

Napieralski Stephanie A SA Buss Heather L HL Brantley Susan L SL Lee Seungyeol S Xu Huifang H Roden Eric E EE

Proceedings of the National Academy of Sciences of the United States of America 20191216 52

The flux of solutes from the chemical weathering of the continental crust supplies a steady supply of essential nutrients necessary for the maintenance of Earth's biosphere. Promotion of weathering by microorganisms is a well-documented phenomenon and is most often attributed to heterotrophic microbial metabolism for the purposes of nutrient acquisition. Here, we demonstrate the role of chemolithotrophic ferrous iron [Fe(II)]-oxidizing bacteria in biogeochemical weathering of subsurface Fe(II)-s ...[more]

PMID: 31843926

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Project description:When its hydrothermal supply ceases, hydrothermal sulfide chimneys become inactive and commonly experience oxidative weathering on the seafloor. However, little is known about the oxidative weathering of inactive sulfide chimneys, nor about associated microbial community structures and their succession during this weathering process. In this work, an inactive sulfide chimney and a young chimney in the early sulfate stage of formation were collected from the Main Endeavor Field of the Juan de Fuca Ridge. To assess oxidative weathering, the ultrastructures of secondary alteration products accumulating on the chimney surface were examined and the presence of possible Fe-oxidizing bacteria (FeOB) was investigated. The results of ultrastructure observation revealed that FeOB-associated ultrastructures with indicative morphologies were abundantly present. Iron oxidizers primarily consisted of members closely related to Gallionella spp. and Mariprofundus spp., indicating Fe-oxidizing species likely promote the oxidative weathering of inactive sulfide chimneys. Abiotic accumulation of Fe-rich substances further indicates that oxidative weathering is a complex, dynamic process, alternately controlled by FeOB and by abiotic oxidization. Although hydrothermal fluid flow had ceased, inactive chimneys still accommodate an abundant and diverse microbiome whose microbial composition and metabolic potential dramatically differ from their counterparts at active vents. Bacterial lineages within current inactive chimney are dominated by members of α-, δ-, and γ-Proteobacteria and they are deduced to be closely involved in a diverse set of geochemical processes including iron oxidation, nitrogen fixation, ammonia oxidation and denitrification. At last, by examining microbial communities within hydrothermal chimneys at different formation stages, a general microbial community succession can be deduced from early formation stages of a sulfate chimney to actively mature sulfide structures, and then to the final inactive altered sulfide chimney. Our findings provide valuable insights into the microbe-involved oxidative weathering process and into microbial succession occurring at inactive hydrothermal sulfide chimney after high-temperature hydrothermal fluids have ceased venting.

Project description:Collapsing gully erosion is the main important and specific soil erosion type in the red soil region of tropical and subtropical South China. Knowledge of the soil disintegration characteristics within different weathering profiles (surface layer, red soil layer, sandy soil layer and detritus layer) and its relationships with soil particle size distribution and soil properties is important in understanding the mechanism of the forming process and development of the collapsing gully. In this paper, we conducted an experiment on four collapsing gullies located four counties (Tongcheng County, Gan County, Anxi County and Wuhua County) in the hilly granitic region of southern China. The anti-disintegration ability of the different weathering profiles with two different moisture conditions (the air-dried condition and the natural state condition) were determined by the anti-disintegration index (Kc) and measured by the submerging test. The results show that the coarse particles are higher in the sandy soil layer and the detritus layer of collapsing gully than that in the surface layer and the red soil layer, but the finer particles show the inversed order. The Kc values reduce significantly from the surface layer to the detritus layer. In the surface layer and the red soil layer, the Kc values in the natural state condition are much higher than that in the air-dried condition. The results highlight that, the sandy soil layer and the detritus layer are easily to disintegrate compare with the surface layer and the red soil layer, and in the case of low soil water content, the soil in any layer of collapsing gully is easy to disintegrate. The regression equation shows a very significant and positive relationship between the Kc values and the < 0.002 mm particles contents and the SOM (soil organic matter) (p<0.01), and negative relationship between the Kc values and the contents of other soil particle size. The results revealed that the repulsive force produced by compressed air in the soil exceeds the suction between the soil particles is the predominant factor to soil disintegrate rates in the air-dried state condition. Whereas the soil contained a certain amount of water can reduce the degree of disintegration. The results also indicated that the more contents of the cementation agents (like clay and SOM) in the soil of the different layers of collapsing gully, the higher Kc values (it means the more difficult to disintegrate).

Dataset Information

Microbial chemolithotrophy mediates oxidative weathering of granitic bedrock.

Publications

Microbial chemolithotrophy mediates oxidative weathering of granitic bedrock.

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