Dataset Information

ETAPOD: A forecast model for prediction of black pod disease outbreak in Nigeria.

ABSTRACT: Food poisoning and environmental pollution are products of excessive chemical usage in Agriculture. In Nigeria, cocoa farmers apply fungicides frequently to control black pod disease (BPD), this practice is life threatening and lethal to the environment. The development of a warning system to detect BPD outbreak can help minimize excessive usage of fungicide by farmers. 8 models (MRM1-MRM8) were developed and 5 (MRM1-MRM5) selected for optimization and performance check. MRM5 (ETAPOD) performed better than the other forecast models. ETAPOD had 100% performance rating for BPD prediction in Ekiti (2009, 2010, 2011 and 2015) with model efficiency of 95-100%. The performance of the model was rated 80% in 2010 and 2015 (Ondo) with model efficiency of 85-90%, 70% in 2011 (Osun) with model efficiency of 81-84%, 60% in 2010 (Ondo and Osun) and 2015 (Osun) with model efficiency of 75-80%, 40% in 2009 (Osun) with model efficiency of 65-69% and 0% 1n 2011 (Ondo) with model efficiency between 0 and 49%. ETAPOD is a simplified BPD detection device for the past, present and future.

SUBMITTER: Etaware PM

PROVIDER: S-EPMC6953891 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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ETAPOD: A forecast model for prediction of black pod disease outbreak in Nigeria.

Etaware Peter M PM Adedeji Abiodun R AR Osowole Oyedeji I OI Odebode Adegboyega C AC

PloS one 20200110 1

Food poisoning and environmental pollution are products of excessive chemical usage in Agriculture. In Nigeria, cocoa farmers apply fungicides frequently to control black pod disease (BPD), this practice is life threatening and lethal to the environment. The development of a warning system to detect BPD outbreak can help minimize excessive usage of fungicide by farmers. 8 models (MRM1-MRM8) were developed and 5 (MRM1-MRM5) selected for optimization and performance check. MRM5 (ETAPOD) performed ...[more]

PMID: 31923186

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Project description:Black pod disease, caused by Phytophthora species, is among the main limiting factors of cacao (Theobroma cacao L.) production. High incidence levels of black pod disease have been reported in Brazil, being induced by Phytophthora capsici, Phytophthora citrophthora, Phytophthora heveae, and Phytophthora palmivora. To assess the diversity of Phytophthora species affecting cacao in Brazil, 40 new isolates were obtained from cacao pods exhibiting symptoms of black pod disease collected in different smallholder farms in 2017. Further, ten cacao-infecting isolates morphologically identified as P. citrophthora and P. palmivora were molecularly characterized. The genomic regions beta-tubulin, elongation factor 1 alpha, heat shock protein 90, and internal transcribed spacer, and the mitochondrially encoded cytochrome c oxidase I and II genes were PCR-amplified and Sanger-sequenced from the cacao-infecting Phytophthora isolates. The morphological characterization and evaluation of the mycelial growth rates for the Phytophthora isolates were performed in vitro. Based on the molecular analysis and morphological comparisons, 19 isolates were identified as P. palmivora (clade 4). Interestingly, 31 isolates grouped together in the phylogenetic tree and were placed apart from previously known species in Phytophthora clade 2. Therefore, these isolates are considered as a new species herein referred to as Phytophthora theobromicola sp. nov., which produced papillate, semipapillate, and persistent sporangia on simple sporangiophores. The P. palmivora isolates were identified as A1 mating type by pairing each isolate with known A1 and A2 tester strains of P. capsici, but no oogonia/antheridia were observed when P. theobromicola was paired with the different tester strains. The P. theobromicola and P. citrophthora isolates showed higher mycelial growth rates, when compared to P. palmivora, on different media at 10, 15, and 20°C, but similar values were observed when grown on clarified CA media at 25 and 30°C. The pathogenicity tests carried out on pods of four cacao clones (CCN51, PS1319, Cepec2004, and CP49) showed significant variability among the isolates of both Phytophthora species, with P. theobromicola inducing higher rates of necrotic lesion expansion, when compared to P. palmivora. Here, two Phytophthora species were found associated with black pod disease in the state of Bahia, Brazil, and the previously undescribed P. theobromicola seems to be prevalent in field conditions. This is the first report of P. theobromicola on T. cacao. Also, these findings are crucial to improve the disease control strategies, and for the development of cacao materials genetically resistant to Phytophthora.

Dataset Information

ETAPOD: A forecast model for prediction of black pod disease outbreak in Nigeria.

Publications

ETAPOD: A forecast model for prediction of black pod disease outbreak in Nigeria.

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