WhatsGNU: a tool for identifying proteomic novelty.
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ABSTRACT:
SUBMITTER: Moustafa AM
PROVIDER: S-EPMC7059281 | biostudies-literature | 2020 Mar
REPOSITORIES: biostudies-literature
Publications
WhatsGNU: a tool for identifying proteomic novelty.
Moustafa Ahmed M AM Planet Paul J PJ
Genome biology 20200305 1
To understand diversity in enormous collections of genome sequences, we need computationally scalable tools that can quickly contextualize individual genomes based on their similarities and identify features of each genome that make them unique. We present WhatsGNU, a tool based on exact match proteomic compression that, in seconds, classifies any new genome and provides a detailed report of protein alleles that may have novel functional differences. We use this technique to characterize the tot ...[more]
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