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Topological Properties of Neuromorphic Nanowire Networks.

ABSTRACT: Graph theory has been extensively applied to the topological mapping of complex networks, ranging from social networks to biological systems. Graph theory has increasingly been applied to neuroscience as a method to explore the fundamental structural and functional properties of human neural networks. Here, we apply graph theory to a model of a novel neuromorphic system constructed from self-assembled nanowires, whose structure and function may mimic that of human neural networks. Simulations of neuromorphic nanowire networks allow us to directly examine their topology at the individual nanowire-node scale. This type of investigation is currently extremely difficult experimentally. We then apply network cartographic approaches to compare neuromorphic nanowire networks with: random networks (including an untrained artificial neural network); grid-like networks and the structural network of C. elegans. Our results demonstrate that neuromorphic nanowire networks exhibit a small-world architecture similar to the biological system of C. elegans, and significantly different from random and grid-like networks. Furthermore, neuromorphic nanowire networks appear more segregated and modular than random, grid-like and simple biological networks and more clustered than artificial neural networks. Given the inextricable link between structure and function in neural networks, these results may have important implications for mimicking cognitive functions in neuromorphic nanowire networks.

SUBMITTER: Loeffler A

PROVIDER: S-EPMC7069063 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Topological Properties of Neuromorphic Nanowire Networks.

Loeffler Alon A Zhu Ruomin R Hochstetter Joel J Li Mike M Fu Kaiwei K Diaz-Alvarez Adrian A Nakayama Tomonobu T Shine James M JM Kuncic Zdenka Z

Frontiers in neuroscience 20200306

Graph theory has been extensively applied to the topological mapping of complex networks, ranging from social networks to biological systems. Graph theory has increasingly been applied to neuroscience as a method to explore the fundamental structural and functional properties of human neural networks. Here, we apply graph theory to a model of a novel neuromorphic system constructed from self-assembled nanowires, whose structure and function may mimic that of human neural networks. Simulations of ...[more]

PMID: 32210754

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Project description:BackgroundHigh throughput gene expression experiments yield large amounts of data that can augment our understanding of disease processes, in addition to classifying samples. Here we present new paradigms of data Separation based on construction of transcriptional regulatory networks for normal and abnormal cells using sequence predictions, literature based data and gene expression studies. We analyzed expression datasets from a number of diseased and normal cells, including different types of acute leukemia, and breast cancer with variable clinical outcome.ResultsWe constructed sample-specific regulatory networks to identify links between transcription factors (TFs) and regulated genes that differentiate between healthy and diseased states. This approach carries the advantage of identifying key transcription factor-gene pairs with differential activity between healthy and diseased states rather than merely using gene expression profiles, thus alluding to processes that may be involved in gene deregulation. We then generalized this approach by studying simultaneous changes in functionality of multiple regulatory links pointing to a regulated gene or emanating from one TF (or changes in gene centrality defined by its in-degree or out-degree measures, respectively). We found that samples can often be separated based on these measures of gene centrality more robustly than using individual links. We examined distributions of distances (the number of links needed to traverse the path between each pair of genes) in the transcriptional networks for gene subsets whose collective expression profiles could best separate each dataset into predefined groups. We found that genes that optimally classify samples are concentrated in neighborhoods in the gene regulatory networks. This suggests that genes that are deregulated in diseased states exhibit a remarkable degree of connectivity.ConclusionTranscription factor-regulated gene links and centrality of genes on transcriptional networks can be used to differentiate between cell types. Transcriptional network blueprints can be used as a basis for further research into gene deregulation in diseased states.

Dataset Information

Topological Properties of Neuromorphic Nanowire Networks.

Publications

Topological Properties of Neuromorphic Nanowire Networks.

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