Dataset Information

Effects of shell sand burial on seedling emergence, growth and stoichiometry of Periploca sepium Bunge.

ABSTRACT: BACKGROUND:Sand burial plays an irreplaceable and unique role in the growth and distribution of vegetation on the Shell Dike Island in the Yellow River Delta. There are still some unknown on the effects of sand burial on the morphology, biomass, and especially the stoichiometry of Periploca sepium, as well as the relationship between these factors. RESULTS:Shell sand burial depth had a significant influence on seedling emergence, growth, and biomass of P. sepium. Shallow sand burial shortened the emergence time and improved the emergence rate, morphological and biomass of P. sepium compared to deep burial and the control. Burial depth significantly affected the nitrogen (N) and phosphorus (P) contents of the leaves. With deep burial, the carbon/nitrogen (C/N) and carbon/phosphorus (C/P) ratios decreased firstly and then increased with depth, while the nitrogen/phosphorus ratio (N/P) presented the contrary trend. Correlation analysis showed that the stoichiometry of N/P was positively correlated to morphology and biomass of P. sepium at different burial depths. Structural equation model analysis revealed that N was the largest contributor to P. sepium biomass. CONCLUSIONS:Optimal burial depth is beneficial to the seedling emergence, growth and nutritional accumulation of P. sepium. Stoichiometry has an important influence on the morphological formation and biomass accumulation.

SUBMITTER: Li T

PROVIDER: S-EPMC7069190 | biostudies-literature | 2020 Mar

REPOSITORIES: biostudies-literature

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Effects of shell sand burial on seedling emergence, growth and stoichiometry of Periploca sepium Bunge.

Li Tian T Sun Jingkuan J Yang Hongjun H Liu Jingtao J Xia Jiangbao J Shao Pengshuai P

BMC plant biology 20200312 1

<h4>Background</h4>Sand burial plays an irreplaceable and unique role in the growth and distribution of vegetation on the Shell Dike Island in the Yellow River Delta. There are still some unknown on the effects of sand burial on the morphology, biomass, and especially the stoichiometry of Periploca sepium, as well as the relationship between these factors.<h4>Results</h4>Shell sand burial depth had a significant influence on seedling emergence, growth, and biomass of P. sepium. Shallow sand buri ...[more]

PMID: 32164525

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Project description:Periploca sepium Bunge is a traditional medicinal plant, whose root bark is important for Chinese herbal medicine. Its major bioactive compounds are C21 steroids and periplocin, a kind of cardiac glycoside, which are derived from the steroid synthesis pathway. However, research on P. sepium genome or transcriptomes and their related genes has been lacking for a long time. In this study we estimated this species nuclear genome size at 170 Mb (using flow cytometry). Then, RNA sequencing of four different tissue samples of P. sepium (leaves, roots, adventitious roots, and calli) was done using the sequencing platform Illumina/Solexa Hiseq 2,500. After de novo assembly and quantitative assessment, 90,375 all-transcripts and 71,629 all-unigenes were finally generated. Annotation efforts that used a number of public databases resulted in detailed annotation information for the transcripts. In addition, differentially expressed genes (DEGs) were identified by using digital gene profiling based on the reads per kilobase of transcript per million reads mapped (RPKM) values. Compared with the leaf samples (L), up-regulated genes and down-regulated genes were eventually obtained. To deepen our understanding of these DEGs, we performed two enrichment analyses: gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). Here, the analysis focused upon the expression characteristics of those genes involved in the terpene metabolic pathway and the steroid biosynthesis pathway, to better elucidate the molecular mechanism of bioactive steroid synthesis in P. sepium. The bioinformatics analysis enabled us to find many genes that are involved in bioactive steroid biosynthesis. These genes encoded acetyl-CoA acetyltransferase (ACAT), HMG-CoA synthase (HMGS), HMG-CoA reductase (HMGR), mevalonate kinase (MK), phosphomevalonate kinase (PMK), mevalonate diphosphate decarboxylase (MDD), isopentenylpyrophosphate isomerase (IPPI), farnesyl pyrophosphate synthase (FPS), squalene synthase (SS), squalene epoxidase (SE), cycloartenol synthase (CAS), sterol C-24 methyltransferase (SMT1), sterol-4alpha-methyl oxidase 1 (SMO1), sterol 14alpha-demethylase (CYP51/14-SDM), delta(14)-sterol reductase (FK/14SR), C-8,7 sterol isomerase (HYD1), sterol-4alpha-methyl oxidase 2 (SMO2), delta(7)-sterol-C5(6)-desaturase (STE1/SC5DL), 7-dehydrocholesterol reductase (DWF5/DHCR7), delta (24)-sterol reductase (DWF1/DHCR24), sterol 22-desaturase (CYP710A), progesterone 5beta-reductase (5β-POR), 3-beta-hydroxysteroid dehydrogenase (3β-HSD). This research will be helpful to further understand the mechanism of bioactive steroid biosynthesis in P. sepium, namely C21 steroid and periplocin biosynthesis.

Dataset Information

Effects of shell sand burial on seedling emergence, growth and stoichiometry of Periploca sepium Bunge.

Publications

Effects of shell sand burial on seedling emergence, growth and stoichiometry of Periploca sepium Bunge.

Similar Datasets

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