Diversity of Methylobacterium spp. in the Rice of the Vietnamese Mekong Delta.
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ABSTRACT:
SUBMITTER: Lai K
PROVIDER: S-EPMC7104282 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Background The evaluation of nutrient variability plays a crucial role in accessing soil potentials and practical intervention responses in rice production systems. Synthetic fertilizer applications and cultivation practices are considered key factors affecting nutrient dynamics and availability. Here, we assessed the nutrient dynamics in surface, subsurface water and soil under local water management and conventional rice cultivation practices in the Vietnamese Mekong Delta. Methods We implemented a field experiment (200 m 2) in the 2018 wet season and the 2019 dry season in a triple rice-cropping field. Eight samples of surface water, subsurface water (30-45 cm), and topsoil (0-20 cm) were collected and analysed during the rice-growing seasons. Results The results showed that N-NH 4 +, P-PO 4 3- and total P peaks were achieved after fertilizing. Irrespective of seasons, the nutrient content in surface water was always greater than that of subsurface water ( P < 0.001), with the exception of N-NO 3 -, which was insignificant ( P > 0.05). When comparing the wet and dry seasons, nutrient concentrations exhibited minor differences ( P > 0.05). Under conventional rice cultivation, the effects of synthetic fertilizer topdressing on the total N, soil organic matter (SOM), and total P were negligible in the soil. Higher rates of N fertilizer application did not significantly increase soil N-NH 4 +, total N, yet larger P fertilizer amounts substantially enhanced soil total P ( P < 0.001). Conclusions Under conventional rice cultivation, N-NH 4 +, P-PO 4 3- and total P losses mainly occur through runoff rather than leaching. While N-NO 3 - loss is similar in surface water and subsurface water. Notably, nutrient content in soil was high; whilst SOM was seen to be low-to-medium between seasons. Future work should consider the nutrient balance and dynamic simulation in the lowland soil of the Vietnamese Mekong Delta's paddy fields.
| S-EPMC10835106 | biostudies-literature
Project description:Oryza rufipogon Griff. is a perennial species of wild rice widely distributed along the channels and rivers of the Mekong Delta, Vietnam. This study attempted to find centers of diversity among wild rice populations in this area and their inter-relationships. The highest genetic diversity was found in the Dong Thap population and the lowest in the Can Tho population. Maternal diversity evaluated using chloroplast INDELs detected ten plastid types, five of which were novel relative to other Asian countries. The mitochondrial genome suggested two unique deletions. One 699-bp deletion via short tandem repeats was accompanied by another deletion including orf153. All accessions carrying the mitochondrial type were found in a particular plastid type. This unique maternal lineage was confined to specific channels where it showed vigorous vegetative growth in comparison to upstream areas where various maternal lineages and maximum genetic diversity occurred. This area along the Mekong Delta is a center of not only nuclear but also maternal diversity.
| S-EPMC6405534 | biostudies-literature
Project description:The Vietnamese Mekong delta is subsiding due to a combination of natural and human-induced causes. Over the past several decades, large-scale anthropogenic land-use changes have taken place as a result of increased agricultural production, population growth and urbanization in the delta. Land-use changes can alter the hydrological system or increase loading of the delta surface, amplifying natural subsidence processes or creating new anthropogenic subsidence. The relationships between land use histories and current rates of land subsidence have so far not been studied in the Mekong delta. We quantified InSAR-derived subsidence rates for the various land-use classes and past land-use changes using a new, optical remote sensing-based, 20-year time series of land use. Lowest mean subsidence rates were found for undeveloped land-use classes, like marshland and wetland forest (~6-7mmyr-1), and highest rates for areas with mixed-crop agriculture and cities (~18-20mmyr-1). We assessed the relationship strength between current land use, land-use history and subsidence by predicting subsidence rates during the measurement period solely based on land-use history. After initial training of all land-use sequences with InSAR-derived subsidence rates, the land-use-based approach predicted 65-92% of the spatially varying subsidence rates within the measurement error range of the InSAR observations (RMSE=5.8mm). As a result, the spatial patterns visible in the observed subsidence can largely be explained by land use. We discuss in detail the dominant land-use change pathways and their indirect, causal relationships with subsidence. Our spatially explicit evaluation of these pathways provides valuable insights for policymakers concerned with land-use planning in both subsiding and currently stable areas of the Mekong delta and similar systems.
| S-EPMC5996392 | biostudies-literature
Project description:This paper compiles the data associated with a research article published in STOTEN [1]. The data set represents figures, tables, and images illustrating the temporal and spatial distribution of land use and flood dynamics from 2000 to 2020 in the Vietnamese Mekong Delta (VMD). The MODIS imageries were freely accessed online via the NASA website [2] and processed to land use and flood maps based on the algorithms by Sakamoto et al. [3,4]. The MODIS products show a high validation with statistical data and radar satellites [1]. The datasets of flood map and land use, therefore, are available to scientists, engineers, and policy-makers in agricultural management associated with flood management in the VMD. They could be used for policy settings, household livelihood assessment as well as other economic analyses for the VMD region due to the change of land use and flooding dynamics.
| S-EPMC9126835 | biostudies-literature
Project description:Periophthalmus chrysospilos is an amphibious fish living in mudflats from eastern India to Indonesia, including the Vietnamese Mekong Delta. Population biological traits play an important role in fishery assessment, but understanding is limited for this species. In total 1,031 specimens were caught in two regions covering four provinces, including the TVST (Duyen Hai, Tra Vinh and Tran De, Soc Trang) and BLCM (Dong Hai, Bac Lieu and Dam Doi, Ca Mau). Results found that the sex ratio was close to 1:1. The parameters of the von Bertalanffy in TVST were L∞ = 12.8 cm, K = 0.41 yr-1, t0 = -0.10 yr and in BLCM were 12.7 cm, 0.38 yr-1 and -0.08 yr, respectively. Although the growth coefficient (Φ') in BLCM (1.79), was lower than that in TVST (1.83), the species shared a similar size at first capture (7.9 cm in TVST and 7.9 cm in BLCM). The species suffered from heavy pressure of fishing in TVST as fishing mortality in TVST (2.32 yr-1) was higher than that in BLCM (1.38 yr-1), leading to the higher total mortality (Z = 3.60 yr-1) in TVST compared to BLCM (Z = 2.59 yr-1). By contrast, the species showed similar natural mortality over both sites (1.20 yr-1 in TVST and 1.22 yr-1 in BLCM). The Periophthalmus chrysospilos population was reasonably exploited because E values (0.64 in TVST and 0.53 in BLCM) were lower than E10 (0.706 in BTTV and 0.705 in STBL). Nonetheless, to avoid the consequences of overfishing, some sustainable fisheries practices should be implemented, such as protecting mangrove forests, restricting fishing during the recruitment period, using appropriate fishing tools and increasing mesh size.
| S-EPMC9034702 | biostudies-literature
Project description:The Mekong River Delta is the rice production hub in South-east Asia and has a key role in determining rice prices in the world market. The increasing variability in the local climate due to global climate changes and the increasing severity of the ENSO phenomenon threatens rice production in the region, which has consequences for local and global food security. Though existing mapping efforts delineate the consequences of saline water intrusion during El Niño and flooding events during La Niña in the basin, research to predict future impacts in rice production is rather limited. The current work uses ORYZA, an ecophysiological model, combined with historical climate data, climate change scenarios RCP4.5 and 8.5 and climate-related risk maps to project the aggregate productivity and rice production impacts by the year 2050. Results show that in years of average salinity intrusion and flooding, the winter-spring rice crop in the MRD would experience an average annual decrease of 720,450 tons for 2020-2050 under the RCP4.5 scenario compared to the baseline of 2005-2016 average and another 1.17 million tons under the RCP8.5 scenario. The autumn-winter crop would decrease by 331,480 tons under RCP4.5 and 462,720 tons under RCP8.5. In years of severe salinity intrusion and flooding, the winter-spring rice crop would decrease by 2.13 million tons (10.29% lower than the projection for an average year) under RCP4.5 and 2.5 million tons (13.62%) under RCP8.5. Under severe conditions, the autumn-winter crop would have an average decrease of 1.3 million tons (7.36%) under RCP4.5 and 1.4 million tons (10.88%) for the RCP8.5 scenario. Given that most of the rice produced in this area is exported, a decline in rice supply at this scale would likely have implications on the global market price of rice affecting global food security. Such decline will also have implications for the rural economy and food security of Vietnam. Suggestions for corrective measures to reduce the impacts are briefly discussed.
| S-EPMC6804992 | biostudies-literature
Project description:The floods in the Vietnamese Mekong Delta have long caused a shortage of clean water supply, which has a significant impact on the indigenous people in the region. We have conducted a preliminary survey of the water quality of the Hau Giang River (one of the two main branches of the Mekong River) before, during, and after the flood season. The obtained results demonstrated that the water in the Hau Giang River was highly turbid and contaminated with a large number of harmful microorganisms. Thus, in this study, a simple filter system based on silver nanoparticles coated onto activated carbon derived from rice husk (AgNPs@AC) has been proposed for treating floodwater from the Hau Giang River. The optimal conditions for AgNPs@AC preparation were established. The prepared AgNPs@AC was then characterized using various surface analyses such as SEM, TEM, XRD, BET, FTIR, and DLS. The initial floodwater source would be pre-treated with polyaluminum chloride using the coagulation-sedimentation method to remove the suspended solids before being discharged into the filtration column containing AgNPs@AC. The results showed that the filter system based on AgNPs@AC performed well in removing turbidity, dissolved solids, suspended solids, color, and bacteria from the floodwater. In addition, it was determined that the filter column with a 30 mm thick AgNPs@AC layer could continuously process 1300 m3 of the floodwater and had a service life of more than two months. The findings of this study not only added to our understanding of the floodwater treatment capacity of activated carbon coated nanoparticles, but they also provided valuable information for water treatment plants along the Hau Giang River, aquatic ecosystem researchers, and public health researchers.
| S-EPMC9044641 | biostudies-literature
Project description:IntroductionHousehold food insecurity and inadequate water, sanitation, and hygiene (WASH) contribute to ill health. However, the interactions between household food insecurity, WASH and health have been rarely assessed concurrently. This study investigated compounded impacts of household food insecurity and WASH on self-reported physical and mental health of adults in the Vietnamese Mekong Delta.Materials and methodsThis cross-sectional survey interviewed 552 households in one northern and one southern province of the Vietnamese Mekong Delta. The survey incorporated previously validated tools such as the Short Form 12-item Health Survey, Household Food Insecurity Assessment Scale, and the Access and Behavioural Outcome Indicators for Water, Sanitation, and Hygiene. Physical and mental health were quantified using the physical health composite score (PCS) and mental health composite score (MCS), respectively. These measures were the dependent variables of interest for this study.ResultsStatistical analysis revealed that household food insecurity and using <50 litres of water per person per day (pppd) were independently associated with lower PCS (p<0.05), after adjusting for socio-economic confounders. Household food insecurity and lack of food availability, using <50 litres of water pppd, and the use of untreated drinking water were associated with lower MCS (p<0.05), with water usage being an effect modifier of the relationship between household food insecurity and MCS. The results indicate that being food insecure and having limited potable quality water had a compounding effect on MCS, compared to being individually either food insecure or having limited water.ConclusionThis study is one of only a few that have established a link between potable water availability, food insecurity and poorer physical and mental health. The results also indicate a need to validate national data with fine-scale investigations in less populous regions to evaluate national initiatives with local populations that may be at higher risk. Adopting joint dual-action policies for interventions that simultaneously address water and food insecurity should result in larger improvements in health, particularly mental health, compared to targeting either food or water insecurity in isolation.
| S-EPMC9071150 | biostudies-literature
Project description:This present study provides an overview of the reproductive traits, including ovarian development, spawning season, size at maturity (Lm), and fecundity of Acentrogobius viridipunctatus – a high economic value fish in the Vietnamese Mekong Delta (VMD). A total of 432 females were collected using trawl nets from January to December 2020 at four sites, including Long Huu-Tra Vinh (LHTV), Trung Binh-Soc Trang (TBST), Dien Hai-Bac Lieu (DHBL), and Tan Thuan-Ca Mau (TTCM). The ovarian diameter was seen to increase from 2.09 (stage I) to 6.57 mm (stage V). Histological analysis showed that the goby was a multi-spawner due to the different oocyte stages found in stages IV and V of ovaries. It can release eggs all year-round due to the monthly appearance of ovarian stages IV and V during the study period, with the main peak in the 2–4 months of the wet season noted with the highest value of gonadosomatic index at that time. The Lm increased from 6.6 cm at TBST to 9.4 cm at TTCM. This species displayed relatively high fecundity, ranging from 5,481 to 130,683 eggs/female. The average fecundity of this fish was 27,698 ± 7,983 eggs/female at LHTV, 46,592 ± 7,264 eggs/female at TBST, 23,271 ± 4,985 eggs/female at DHBL, and 31,408 ± 2,515 eggs/female at TTCM. Egg diameter ranged from 0.45 ± 0.01 at DHBL to 0.50 ± 0.01 at TBST. For sustainable exploitation, local governments should ask the fishers to avoid catching fish during the main spawning period, and the fish length at first capture should be >Lm.
| S-EPMC9509675 | biostudies-literature
Project description:The ecology and distribution of many bacteria is strongly associated with specific eukaryotic hosts. However, the impact of such host association on bacterial ecology and evolution is not well understood. Bacteria from the genus Methylobacterium consume plant-derived methanol, and are some of the most abundant and widespread plant-associated bacteria. In addition, many of these species impact plant fitness. To determine the ecology and distribution of Methylobacterium in nature, we sampled bacteria from 36 distinct rice landraces, traditionally grown in geographically isolated locations in North-East (NE) India. These landraces have been selected for diverse phenotypic traits by local communities, and we expected that the divergent selection on hosts may have also generated divergence in associated Methylobacterium strains. We determined the ability of 91 distinct rice-associated Methylobacterium isolates to use a panel of carbon sources, finding substantial variability in carbon use profiles. Consistent with our expectation, across spatial scales this phenotypic variation was largely explained by host landrace identity rather than geographical factors or bacterial taxonomy. However, variation in carbon utilisation was not correlated with sugar exudates on leaf surfaces, suggesting that bacterial carbon use profiles do not directly determine bacterial colonization across landraces. Finally, experiments showed that at least some rice landraces gain an early growth advantage from their specific phyllosphere-colonizing Methylobacterium strains. Together, our results suggest that landrace-specific host-microbial relationships may contribute to spatial structure in rice-associated Methylobacterium in a natural ecosystem. In turn, association with specific bacteria may provide new ways to preserve and understand diversity in one of the most important food crops of the world.
| S-EPMC7039438 | biostudies-literature