Colorstock, SScolor, Raton: RNA alignment visualization tools.
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ABSTRACT:
SUBMITTER: Bendana YR
PROVIDER: S-EPMC7109877 | biostudies-literature | 2008 Feb
REPOSITORIES: biostudies-literature
Publications
Colorstock, SScolor, Ratón: RNA alignment visualization tools.
Bendaña Yuri R YR Holmes Ian H IH
Bioinformatics (Oxford, England) 20080124 4
<h4>Unlabelled</h4>Interactive examination of RNA multiple alignments for covariant mutations is a useful step in non-coding RNA sequence analysis. We present three parallel implementations of an RNA visualization metaphor: Colorstock, a command-line script using ANSI terminal color; SScolor, a Perl script that generates static HTML pages; and Ratón, an AJAX web application generating dynamic HTML. Each tool can be used to color RNA alignments by secondary structure and to visually highlight com ...[more]
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