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Alcohol-derived DNA crosslinks are repaired by two distinct mechanisms.

ABSTRACT: Acetaldehyde is a highly reactive, DNA-damaging metabolite that is produced upon alcohol consumption1. Impaired detoxification of acetaldehyde is common in the Asian population, and is associated with alcohol-related cancers1,2. Cells are protected against acetaldehyde-induced damage by DNA crosslink repair, which when impaired causes Fanconi anaemia (FA), a disease resulting in failure to produce blood cells and a predisposition to cancer3,4. The combined inactivation of acetaldehyde detoxification and the FA pathway induces mutation, accelerates malignancies and causes the rapid attrition of blood stem cells5-7. However, the nature of the DNA damage induced by acetaldehyde and how this is repaired remains a key question. Here we generate acetaldehyde-induced DNA interstrand crosslinks and determine their repair mechanism in Xenopus egg extracts. We find that two replication-coupled pathways repair these lesions. The first is the FA pathway, which operates using excision-analogous to the mechanism used to repair the interstrand crosslinks caused by the chemotherapeutic agent cisplatin. However, the repair of acetaldehyde-induced crosslinks results in increased mutation frequency and an altered mutational spectrum compared with the repair of cisplatin-induced crosslinks. The second repair mechanism requires replication fork convergence, but does not involve DNA incisions-instead the acetaldehyde crosslink itself is broken. The Y-family DNA polymerase REV1 completes repair of the crosslink, culminating in a distinct mutational spectrum. These results define the repair pathways of DNA interstrand crosslinks caused by an endogenous and alcohol-derived metabolite, and identify an excision-independent mechanism.

SUBMITTER: Hodskinson MR

PROVIDER: S-EPMC7116288 | biostudies-literature | 2020 Mar

REPOSITORIES: biostudies-literature

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Alcohol-derived DNA crosslinks are repaired by two distinct mechanisms.

Hodskinson Michael R MR Bolner Alice A Sato Koichi K Kamimae-Lanning Ashley N AN Rooijers Koos K Witte Merlijn M Mahesh Mohan M Silhan Jan J Petek Maya M Williams David M DM Kind Jop J Chin Jason W JW Patel Ketan J KJ Knipscheer Puck P

Nature 20200304 7800

Acetaldehyde is a highly reactive, DNA-damaging metabolite that is produced upon alcohol consumption1. Impaired detoxification of acetaldehyde is common in the Asian population, and is associated with alcohol-related cancers1,2. Cells are protected against acetaldehyde-induced damage by DNA crosslink repair, which when impaired causes Fanconi anaemia (FA), a disease resulting in failure to produce blood cells and a predisposition to cancer3,4. The combined inacti ...[more]

PMID: 32132710

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Project description:Overexpression of human DNA polymerase kappa (hpol ?) in glioblastoma is associated with shorter survival time and resistance to the alkylating agent temozolomide (TMZ), making it an attractive target for the development of small-molecule inhibitors. We previously reported on the development and characterization of indole barbituric acid-derived (IBA) inhibitors of translesion DNA synthesis polymerases (TLS pols). We have now identified a potent and selective inhibitor of hpol ? based on the indole-aminoguanidine (IAG) chemical scaffold. The most promising IAG analogue, IAG-10, exhibited greater inhibitory action against hpol ? than any other human Y-family member, as well as pols from the A-, B-, and X-families. Inhibition of hpol ? by IAG analogues appears to proceed through a mechanism that is distinct from inhibition of hpol ? based on changes in DNA binding affinity and nucleotide insertion kinetics. By way of comparison, both IAG and IBA analogues inhibited binary complex formation by hpol ? and ternary complex formation by hpol ?. Decreasing the concentration of enzyme and DNA in the reaction mixture lowered the IC50 value of IAG-10 to submicromolar values, consistent with inhibition of binary complex formation for hpol ?. Chemical footprinting experiments revealed that IAG-10 binds to a cleft between the finger, little finger, and N-clasp domains on hpol ? and that this likely disrupts the interaction between the N-clasp and the TLS pol core. In cell culture, IAG-10 potentiated the antiproliferative activity and DNA damaging effects of TMZ in hpol ?-proficient cells but not in hpol ?-deficient cells, indicative of a target-dependent effect. Mutagenic replication across alkylation damage increased in hpol ?-proficient cells treated with IAG-10, while no change in mutation frequency was observed for hpol ?-deficient cells. In summary, we developed a potent and selective small-molecule inhibitor of hpol ? that takes advantage of structural features unique to this TLS enzyme to potentiate TMZ, a standard-of-care drug used in the treatment of malignant brain tumors. Furthermore, the IAG scaffold represents a new chemical space for the exploration of TLS pol inhibitors, which could prove useful as a strategy for improving patient response to genotoxic drugs.

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Alcohol-derived DNA crosslinks are repaired by two distinct mechanisms.

Publications

Alcohol-derived DNA crosslinks are repaired by two distinct mechanisms.

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