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A reference map of the human binary protein interactome.


ABSTRACT: Global insights into cellular organization and genome function require comprehensive understanding of the interactome networks that mediate genotype-phenotype relationships1,2. Here we present a human 'all-by-all' reference interactome map of human binary protein interactions, or 'HuRI'. With approximately 53,000 protein-protein interactions, HuRI has approximately four times as many such interactions as there are high-quality curated interactions from small-scale studies. The integration of HuRI with genome3, transcriptome4 and proteome5 data enables cellular function to be studied within most physiological or pathological cellular contexts. We demonstrate the utility of HuRI in identifying the specific subcellular roles of protein-protein interactions. Inferred tissue-specific networks reveal general principles for the formation of cellular context-specific functions and elucidate potential molecular mechanisms that might underlie tissue-specific phenotypes of Mendelian diseases. HuRI is a systematic proteome-wide reference that links genomic variation to phenotypic outcomes.

SUBMITTER: Luck K 

PROVIDER: S-EPMC7169983 | biostudies-literature | 2020 Apr

REPOSITORIES: biostudies-literature

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A reference map of the human binary protein interactome.

Luck Katja K   Kim Dae-Kyum DK   Lambourne Luke L   Spirohn Kerstin K   Begg Bridget E BE   Bian Wenting W   Brignall Ruth R   Cafarelli Tiziana T   Campos-Laborie Francisco J FJ   Charloteaux Benoit B   Choi Dongsic D   Coté Atina G AG   Daley Meaghan M   Deimling Steven S   Desbuleux Alice A   Dricot Amélie A   Gebbia Marinella M   Hardy Madeleine F MF   Kishore Nishka N   Knapp Jennifer J JJ   Kovács István A IA   Lemmens Irma I   Mee Miles W MW   Mellor Joseph C JC   Pollis Carl C   Pons Carles C   Richardson Aaron D AD   Schlabach Sadie S   Teeking Bridget B   Yadav Anupama A   Babor Mariana M   Balcha Dawit D   Basha Omer O   Bowman-Colin Christian C   Chin Suet-Feung SF   Choi Soon Gang SG   Colabella Claudia C   Coppin Georges G   D'Amata Cassandra C   De Ridder David D   De Rouck Steffi S   Duran-Frigola Miquel M   Ennajdaoui Hanane H   Goebels Florian F   Goehring Liana L   Gopal Anjali A   Haddad Ghazal G   Hatchi Elodie E   Helmy Mohamed M   Jacob Yves Y   Kassa Yoseph Y   Landini Serena S   Li Roujia R   van Lieshout Natascha N   MacWilliams Andrew A   Markey Dylan D   Paulson Joseph N JN   Rangarajan Sudharshan S   Rasla John J   Rayhan Ashyad A   Rolland Thomas T   San-Miguel Adriana A   Shen Yun Y   Sheykhkarimli Dayag D   Sheynkman Gloria M GM   Simonovsky Eyal E   Taşan Murat M   Tejeda Alexander A   Tropepe Vincent V   Twizere Jean-Claude JC   Wang Yang Y   Weatheritt Robert J RJ   Weile Jochen J   Xia Yu Y   Yang Xinping X   Yeger-Lotem Esti E   Zhong Quan Q   Aloy Patrick P   Bader Gary D GD   De Las Rivas Javier J   Gaudet Suzanne S   Hao Tong T   Rak Janusz J   Tavernier Jan J   Hill David E DE   Vidal Marc M   Roth Frederick P FP   Calderwood Michael A MA  

Nature 20200408 7803


Global insights into cellular organization and genome function require comprehensive understanding of the interactome networks that mediate genotype-phenotype relationships<sup>1,2</sup>. Here we present a human 'all-by-all' reference interactome map of human binary protein interactions, or 'HuRI'. With approximately 53,000 protein-protein interactions, HuRI has approximately four times as many such interactions as there are high-quality curated interactions from small-scale studies. The integra  ...[more]

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