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RNA-seq analysis reveals TRPC genes to impact an unexpected number of metabolic and regulatory pathways.

ABSTRACT: The seven-member transient receptor potential canonical genes (TRPC1-7) encode cation channels linked to several human diseases. There is little understanding of the participation of each TRPC in each pathology, considering functional redundancy. Also, most of the inhibitors available are not specific. Thus, we developed mice that lack all of the TRPCs and performed a transcriptome analysis in eight tissues. The aim of this research was to address the impact of the absence of all TRPC channels on gene expression. We obtained a total of 4305 differentially expressed genes (DEGs) in at least one tissue where spleen showed the highest number of DEGs (1371). Just 21 genes were modified in all the tissues. Performing a pathway enrichment analysis, we found that many important signaling pathways were modified in more than one tissue, including PI3K (phosphatidylinositol 3-kinase/protein kinase-B) signaling pathway, cytokine-cytokine receptor interaction, extracellular matrix (ECM)-receptor interaction and circadian rhythms. We describe for the first time the changes at the transcriptome level due to the lack of all TRPC proteins in a mouse model and provide a starting point to understand the function of TRPC channels and their possible roles in pathologies.

SUBMITTER: Formoso K

PROVIDER: S-EPMC7190874 | biostudies-literature | 2020 Apr

REPOSITORIES: biostudies-literature

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RNA-seq analysis reveals TRPC genes to impact an unexpected number of metabolic and regulatory pathways.

Formoso Karina K Susperreguy Sebastian S Freichel Marc M Birnbaumer Lutz L

Scientific reports 20200429 1

The seven-member transient receptor potential canonical genes (TRPC1-7) encode cation channels linked to several human diseases. There is little understanding of the participation of each TRPC in each pathology, considering functional redundancy. Also, most of the inhibitors available are not specific. Thus, we developed mice that lack all of the TRPCs and performed a transcriptome analysis in eight tissues. The aim of this research was to address the impact of the absence of all TRPC channels o ...[more]

PMID: 32350291

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RNA-seq analysis reveals TRPC genes to impact an unexpected number of metabolic and regulatory pathways.

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RNA-seq analysis reveals TRPC genes to impact an unexpected number of metabolic and regulatory pathways.

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