Dataset Information

Organic Amendments Modulate Soil Microbiota and Reduce Virus Disease Incidence in the TSWV-Tomato Pathosystem.

ABSTRACT: Application of organic amendments is considered an eco-friendly practice to promote soil fertility and suppressiveness against a wide range of soil-borne pathogens. However, limited information is available about the capabilities of organic amendments to control virus disease. In this study, the suppressiveness of different organic amendments (i.e., compost manure, biochar, alfalfa straw, and glucose) was determined against the Tomato spotted wilt virus (TSWV) on tomato plants in a 1-year-long mesocosm experiment. Organic treatments were compared to the ordinary soil management based on mineral fertilizers and fumigation. Tomato seedlings were inoculated with TSWV and the infection and symptoms were assessed three weeks later. The disease incidence was higher in soil treated with mineral fertilizers and fumigation (> 80%) compared to the application of organic amendments, with alfalfa straw and biochar recording the lowest incidence (< 40%). Moreover, soil microbiota structure and diversity were assessed by high-throughput sequencing of bacterial and eukaryotic rRNA gene markers. Several members belonging to the bacterial phyla of Acidobacteria, Actinobacteria, Bacteroidetes, and Proteobacteria, as well as members of the fungal genus Acremonium, were positively associated with plant health. This study showed that conventional practices, by shifting microbiome composition, may increase TSWV incidence and severity.

SUBMITTER: Bonanomi G

PROVIDER: S-EPMC7281679 | biostudies-literature | 2020 May

REPOSITORIES: biostudies-literature

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Organic Amendments Modulate Soil Microbiota and Reduce Virus Disease Incidence in the TSWV-Tomato Pathosystem.

Bonanomi Giuliano G Alioto Daniela D Minutolo Maria M Marra Roberta R Cesarano Gaspare G Vinale Francesco F

Pathogens (Basel, Switzerland) 20200514 5

Application of organic amendments is considered an eco-friendly practice to promote soil fertility and suppressiveness against a wide range of soil-borne pathogens. However, limited information is available about the capabilities of organic amendments to control virus disease. In this study, the suppressiveness of different organic amendments (i.e., compost manure, biochar, alfalfa straw, and glucose) was determined against the <i>Tomato spotted wilt virus</i> (TSWV) on tomato plants in a 1-year ...[more]

PMID: 32423086

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Project description:Organic fertilizers have been shown to stimulate CH4 uptake from agricultural soils. Managing fertilizer application to maximize this effect and to minimize emission of other greenhouse gasses offers possibilities to increase sustainability of agriculture. To tackle this challenge, we incubated an agricultural soil with different organic amendments (compost, sewage sludge, digestate, cover crop residues mixture), either as single application or in a mixture and subjected it to different soil moisture concentrations using different amounts of organic amendments. GHG fluxes and in vitro CH4 oxidation rates were measured repeatedly, while changes in organic matter and abundance of GHG relevant microbial groups (nitrifiers, denitrifiers, methanotrophs, methanogens) were measured at the end of the incubation. Overall the dynamics of the analyzed GHGs differed significantly. While CO2 and N2O differed considerably between the treatments, CH4 fluxes remained stable. In contrast, in vitro CH4 oxidation showed a clear increase for all amendments over time. CO2 fluxes were mostly dependent on the amount of organic residue that was used, while N2O fluxes were affected more by soil moisture. Several combinations of amendments led to reductions of CO2, CH4, and/or N2O emissions compared to un-amended soil. Most optimal GHG balance was obtained by compost amendments, which resulted in a similar overall GHG balance as compared to the un-amended soil. However, compost is not very nutrient rich potentially leading to lower crop yield when applied as single fertilizer. Hence, the combination of compost with one of the more nutrient rich organic amendments (sewage sludge, digestate) provides a trade-off between maintaining crop yield and minimizing GHG emissions. Additionally, we could observe a strong increase in microbial communities involved in GHG consumption in all amendments, with the strongest increase associated with cover crop residue mixtures. Future research should focus on the interrelation of plants, soil, and microbes and their impact on the global warming potential in relation to applied organic amendments.

Project description:Vegetated land surfaces play an important role in determining the fate of carbon in the global carbon cycle. However, our understanding of the terrestrial biosphere on a global scale is subject to considerable uncertainty, especially concerning the impacts of climatic variables on the carbon cycle. Soil is a source and also a sink of CO2 exchange and helps in carbon sequestration. Agricultural management practices influence soil water dynamics, as well as carbon cycling by changing soil CO2 emission and uptake rates. The rate of soil CO2 emission varies for different crops and different organic amendments. The major goal of this study was to assess the impacts of the type and rate of organic amendment on soil CO2 emission in a collard greens crop grown in the southeast Texas environment. Thirty-six plots were developed to grow collard greens on Prairie View A&M University's Research Farm. Three types of organic amendments (Chicken manure, Dairy manure, and Milorganite), at four levels of application (0, 168, 336, and 672 kg N/ha) were used and replicated three times. Each organic amendment type was applied to nine randomly selected plots. Three random plots were used as a control in each row. We measured daily soil CO2 emission for the first two weeks and every other day in a week during the experiment. We evaluated the effects of organic amendments and the application rates on soil CO2 emission for collard greens during two growing seasons. The results showed higher the application rates for each organic amendment, higher the CO2 emissions from the soil. The results also showed higher cumulative CO2 emissions for the soils amended with chicken manure and milorganite, but lowest for the soils amended with dairy manure. This field experiment and analyses help better understand the temporal and spatial variations of soil CO2 emission, and also help to develop best management practices to maximize carbon sequestration and to minimize soil CO2 emissions during the growth periods of collard greens under changing temperatures using different organic amendments, and application rates.

Dataset Information

Organic Amendments Modulate Soil Microbiota and Reduce Virus Disease Incidence in the TSWV-Tomato Pathosystem.

Publications

Organic Amendments Modulate Soil Microbiota and Reduce Virus Disease Incidence in the TSWV-Tomato Pathosystem.

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