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Size Matters: Ultra-small and Filterable Microorganisms in the Environment.

ABSTRACT: Ultra-small microorganisms are ubiquitous in Earth's environments. Ultramicrobacteria, which are defined as having a cell volume of <0.1 ?m3, are often numerically dominant in aqueous environments. Cultivated representatives among these bacteria, such as members of the marine SAR11 clade (e.g., "Candidatus Pelagibacter ubique") and freshwater Actinobacteria and Betaproteobacteria, possess highly streamlined, small genomes and unique ecophysiological traits. Many ultramicrobacteria may pass through a 0.2-?m-pore-sized filter, which is commonly used for filter sterilization in various fields and processes. Cultivation efforts focusing on filterable small microorganisms revealed that filtered fractions contained not only ultramicrocells (i.e., miniaturized cells because of external factors) and ultramicrobacteria, but also slender filamentous bacteria sometimes with pleomorphic cells, including a special reference to members of Oligoflexia, the eighth class of the phylum Proteobacteria. Furthermore, the advent of culture-independent "omics" approaches to filterable microorganisms yielded the existence of candidate phyla radiation (CPR) bacteria (also referred to as "Ca. Patescibacteria") and ultra-small members of DPANN (an acronym of the names of the first phyla included in this superphyla) archaea. Notably, certain groups in CPR and DPANN are predicted to have minimal or few biosynthetic capacities, as reflected by their extremely small genome sizes, or possess no known function. Therefore, filtered fractions contain a greater variety and complexity of microorganisms than previously expected. This review summarizes the broad diversity of overlooked filterable agents remaining in "sterile" (<0.2-?m filtered) environmental samples.

SUBMITTER: Nakai R

PROVIDER: S-EPMC7308576 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Size Matters: Ultra-small and Filterable Microorganisms in the Environment.

Nakai Ryosuke R

Microbes and environments 20200101 2

Ultra-small microorganisms are ubiquitous in Earth's environments. Ultramicrobacteria, which are defined as having a cell volume of <0.1 μm<sup>3</sup>, are often numerically dominant in aqueous environments. Cultivated representatives among these bacteria, such as members of the marine SAR11 clade (e.g., "Candidatus Pelagibacter ubique") and freshwater Actinobacteria and Betaproteobacteria, possess highly streamlined, small genomes and unique ecophysiological traits. Many ultramicrobacteria may ...[more]

PMID: 32493880

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Project description:Mediterranean coastal lagoons are affected by multiple threats (demographic pressures, eutrophication, climate change) expected to increase in the future and impact the ecosystem services provided. Conservation norms and scientific studies usually focus on large lagoons (> 0.5 km2) due to their economic importance, while they ignore smaller lagoons. These are poorly understood and often unprotected, despite their prevalence within the Mediterranean region and their importance. Qualitative and quantitative characterisation of small lagoons, in terms of functioning and sensitivity to global and local changes, are needed to develop appropriate management strategies. For this purpose, this work provides the first inventory of all Corsican lagoons and has investigated three of them of small size (Arasu, Santa Giulia, Balistra), characterised by contrasting anthropogenic contexts (highly modified/disturbed, medium disturbance, quasi-pristine). At the regional level, 91 of the 95 lagoons identified are < 0.5 km2, making Corsica a good example for the study of small Mediterranean lagoons. The three case studies showed differences in their seasonal biogeochemical cycles and phytoplankton communities (biomass, diversity, photosynthetic efficiency). Arasu and Santa Giulia lagoons showed an increase in watershed urbanisation (+ 12% and + 6% in 30 years), high phytoplankton biomass, low diversity and blooms of potentially harmful dinoflagellates. Conversely, Balistra lagoon showed a good status overall, but some anthropogenic pollution sources within its watershed. This study demonstrates the importance of small lagoons at regional and Mediterranean scale, and provides knowledge on studied local sites but also potential applications elsewhere. The importance of an integrated approach considering lagoons within their adjacent connected systems (watershed and sea) and anthropogenic contexts is highlighted.Supplementary informationThe online version contains supplementary material available at 10.1007/s12237-023-01182-1.

Dataset Information

Size Matters: Ultra-small and Filterable Microorganisms in the Environment.

Publications

Size Matters: Ultra-small and Filterable Microorganisms in the Environment.

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