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Real-Time Neuron Detection and Neural Signal Extraction Platform for Miniature Calcium Imaging.

ABSTRACT: Real-time neuron detection and neural activity extraction are critical components of real-time neural decoding. In this paper, we propose a novel real-time neuron detection and activity extraction system using a dataflow framework to provide real-time performance and adaptability to new algorithms and hardware platforms. The proposed system was evaluated on simulated calcium imaging data, calcium imaging data with manual annotation, and calcium imaging data of the anterior lateral motor cortex. We found that the proposed system accurately detected neurons and extracted neural activities in real time without any requirement for expensive, cumbersome, or special-purpose computing hardware. We expect that the system will enable cost-effective, real-time calcium imaging-based neural decoding, leading to precise neuromodulation.

SUBMITTER: Lee Y

PROVIDER: S-EPMC7333463 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Real-Time Neuron Detection and Neural Signal Extraction Platform for Miniature Calcium Imaging.

Lee Yaesop Y Xie Jing J Lee Eungjoo E Sudarsanan Srijesh S Lin Da-Ting DT Chen Rong R Bhattacharyya Shuvra S SS

Frontiers in computational neuroscience 20200626

Real-time neuron detection and neural activity extraction are critical components of real-time neural decoding. In this paper, we propose a novel real-time neuron detection and activity extraction system using a dataflow framework to provide real-time performance and adaptability to new algorithms and hardware platforms. The proposed system was evaluated on simulated calcium imaging data, calcium imaging data with manual annotation, and calcium imaging data of the anterior lateral motor cortex. ...[more]

PMID: 32676021

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