Dataset Information

Meta-QTL analysis and identification of candidate genes for drought tolerance in bread wheat (Triticum aestivum L.).

ABSTRACT: Meta-QTL (MQTL) analysis for drought tolerance was undertaken in bread wheat to identify consensus and robust MQTLs using 340 known QTLs from 11 earlier studies; 13 MQTLs located on 6 chromosomes (1D, 3B, 5A, 6D, 7A and 7D) were identified, with maximum of 4 MQTLs on chromosome 5A. Mean confidence intervals for MQTLs were much narrower (mean, 6.01 cM; range 2.07-19.46 cM), relative to those in original QTLs (mean, 13.6 cM; range, 1.0-119.1 cM). Two MQTLs, namely MQTL4 and MQTL12, were major MQTLs with potential for use in marker-assisting breeding. As many as 228 candidate genes (CGs) were also identified using 6 of the 13 MQTLs. In-silico expression analysis of these 228 CGs allowed identification of 14 important CGs, with + 3 to - 8 fold change in expression under drought (relative to normal conditions) in a tolerant cv. named TAM107. These CGs encoded proteins belonging to the following families: NAD-dependent epimerase/dehydratase, protein kinase, NAD(P)-binding domain protein, heat shock protein 70 (Hsp70), glycosyltransferase 2-like, etc. Important MQTLs and CGs identified in the present study should prove useful for future molecular breeding and for the study of molecular basis of drought tolerance in cereals in general and wheat in particular.

SUBMITTER: Kumar A

PROVIDER: S-EPMC7415061 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature

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Meta-QTL analysis and identification of candidate genes for drought tolerance in bread wheat (<i>Triticum aestivum</i> L.).

Kumar Anuj A Saripalli Gautam G Jan Irfat I Kumar Kuldeep K Sharma P K PK Balyan H S HS Gupta P K PK

Physiology and molecular biology of plants : an international journal of functional plant biology 20200730 8

Meta-QTL (MQTL) analysis for drought tolerance was undertaken in bread wheat to identify consensus and robust MQTLs using 340 known QTLs from 11 earlier studies; 13 MQTLs located on 6 chromosomes (1D, 3B, 5A, 6D, 7A and 7D) were identified, with maximum of 4 MQTLs on chromosome 5A. Mean confidence intervals for MQTLs were much narrower (mean, 6.01 cM; range 2.07-19.46 cM), relative to those in original QTLs (mean, 13.6 cM; range, 1.0-119.1 cM). Two MQTLs, namely MQTL4 and MQTL12, were major MQTL ...[more]

PMID: 32801498

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Project description:BackgroundHerbicide tolerance is an important trait that allows effective weed management in wheat crops. Genetic knowledge of metribuzin tolerance in wheat is needed to develop new cultivars for the industry. Here, we evaluated metribuzin tolerance in a recombinant inbred line (RIL) mapping population derived from Synthetic W7984 and Opata 85 over two consecutive years to identify quantitative trait loci (QTL) contributing to the trait. Herbicide tolerance was measured by two chlorophyll traits, SPAD chlorophyll content index (CCI) and visual senescence score (SNS). The markers associated with major QTL from Synthetic W7984, positively contributing to reduced phytotoxic effects under herbicide treatment were validated in two F3/4 recombinant inbred populations developed from crosses of Synthetic W7984 × Westonia and Synthetic W7984 × Lang.ResultsComposite interval mapping (CIM) identified four QTL, two on chromosome 4A and one each on chromosomes 2D and 1A. The chromosomal position of the two QTL mapped on 4A within 10 cM intervals was refined and validated by multiple interval mapping (MIM). The major QTL affecting both measures of tolerance jointly explained 42 and 45% of the phenotypic variation by percentage CCI reduction and SNS, respectively. The identified QTL have a pure additive effect. The metribuzin tolerant allele of markers, Xgwm33 and Xbarc343, conferred lower phytotoxicity and explained the maximum phenotypic variation of 28.8 and 24.5%, respectively. The approximate physical localization of the QTL revealed the presence of five candidate genes (ribulose-bisphosphate carboxylase, oxidoreductase (rbcS), glycosyltransferase, serine/threonine-specific protein kinase and phosphotransferase) with a direct role in photosynthesis and/or metabolic detoxification pathways.ConclusionMetribuzin causes photo-inhibition by interrupting electron flow in PSII. Consequently, chlorophyll traits enabled the measure of high proportion of genetic variability in the mapping population. The validated molecular markers associated with metribuzin tolerance mediating QTL may be used in marker-assisted breeding to select metribuzin tolerant lines. Alternatively, validated favourable alleles could be introgressed into elite wheat cultivars to enhance metribuzin tolerance and improve grain yield in dryland farming for sustainable wheat production.

Project description:Increasing frequency of drought spells occasioned by changing climatic conditions, coupled with rise in demand for bread wheat, calls for the development of high yielding drought resilient genotypes to enhance bread wheat production in areas with moisture deficit. This study was designed to identify and select drought-tolerant bread wheat genotypes using morpho-physiological traits. One hundred and ninety-six bread wheat genotypes were evaluated in greenhouse and field experiments, under well-watered (80% of field capacity) and drought-stressed (35% of field capacity) conditions, for two years. Data were collected on five morphological traits (flag leaf size, flag leaf angle, flag leaf rolling, leaf waxiness and resistance to diseases) and 14 physiological traits. Relative water content (RWC), Excised leaf water retention (ELWR), Relative water loss (RWL), Leaf membrane stability index (LMSI), as well as Canopy temperature depression (CTD) at heading (CTDH), anthesis (CTDA), milking (CTDM), dough stage (CTDD) and ripening (CTDR) were estimated. Similarly, leaf chlorophyll content (SPAD reading) was recorded at heading (SPADH), anthesis (SPADA), milking (SPADM), dough stage (SPADD), and ripening (SPADR). Significant (p<0.01) genotypic differences were found for the traits under both well-watered and drought-stressed conditions. Associations of RWL with SPADH, SPADA, SPADM, SPADD and SPADR were significant (p<0.01) and negative under both watering regimes. The first three principal components accounted for 92.0% and 88.4% of the total variation under well-watered and drought-stressed conditions, respectively and comprised all the traits. The traits CTDD, CTDM, CTDR, SPADH, SPADA, SPADM, SPADD and SPADR with genotypes Alidoro, ET-13A2, Kingbird, Tsehay, ETBW 8816, ETBW 9027, ETBW9402, ETBW 8394 and ETBW 8725 were associated under both conditions. Genotypes with narrow flag leaves, erect flag leaf angles, fully rolled flag leaves, heavily waxed leaves, and resistant to disease manifested tolerance to drought stress. The identified traits and genotypes could be exploited in future breeding programmes for the development of bread wheat genotypes with tolerance to drought.

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Project description:Cytokinins (CKs) are involved in determining the final grain yield in wheat. Multiple gene families are responsible for the controlled production of CKs in plants, including isopentenyl transferases for de novo synthesis, zeatin O-glucosyltransferases for reversible inactivation, β-glucosidases for reactivation, and CK oxidases/dehydrogenases for permanent degradation. Identifying and characterizing the genes of these families is an important step in furthering our understanding of CK metabolism. Using bioinformatics tools, we identified four new TaIPT, four new TaZOG, and 25 new TaGLU genes in common wheat. All of the genes harbored the characteristic conserved domains of their respective gene families. We renamed TaCKX genes on the basis of their true orthologs in rice and maize to remove inconsistencies in the nomenclature. Phylogenetic analysis revealed the early divergence of monocots from dicots, and the gene duplication event after speciation was obvious. Abscisic acid-, auxin-, salicylic acid-, sulfur-, drought- and light-responsive cis-regulatory elements were common to most of the genes under investigation. Expression profiling of CK metabolic gene families was carried out at the seedlings stage in AA genome donor of common wheat. Exogenous application of phytohormones (6-benzylaminopurine, salicylic acid, indole-3-acetic acid, gibberellic acid, and abscisic acid) for 3 h significantly upregulated the transcript levels of all four gene families, suggesting that plants tend to maintain CK stability. A 6-benzylaminopurine-specific maximum fold-change was observed for TuCKX1 and TuCKX3 in root and shoot tissues, respectively; however, the highest expression level was observed in the TuGLU gene family, indicating that the reactivation of the dormant CK isoform is the quickest way to counter external stress. The identification of new CK metabolic genes provides the foundation for their in-depth functional characterization and for elucidating their association with grain yield.

Dataset Information

Meta-QTL analysis and identification of candidate genes for drought tolerance in bread wheat (Triticum aestivum L.).

Publications

Meta-QTL analysis and identification of candidate genes for drought tolerance in bread wheat (<i>Triticum aestivum</i> L.).

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