Browse
Submit Data
Databases
API
Help

Dataset Information

20 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of blue pansy, Junonia orithya (Lepidoptera: Nymphalidae: Nymphalinae) from Pakistan.

ABSTRACT: Junonia orithya's complete mitochondrial genome (mitogenome) is determined to be 14,214 bp in length, including 37 typical mitochondrial genes and an AT-rich region. Its gene order and orientation are identical to those of other butterfly species. All PCGs are initiated by typical ATN codons, except for cox1 gene which is started by CGA codon. Nine genes use complete termination codon (TAA), whereas the COX1, COX2, NADH1 and NAH4 genes end with single T. Except for trnS1(AGN), all tRNA genes display typical secondary cloverleaf structures as those of other insects. The 331 bp long AT-rich region contains several features common to the other lepidopterans, such as the ATAGA motif followed by a 18 bp poly-T stretch, two microsatellite-like (TA) 9 elements, a 5 bp poly-A stretch immediately upstream of trNAM gene from Pakistan.

SUBMITTER: Bibi S

PROVIDER: S-EPMC7510597 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The complete mitochondrial genome of the brown pansy butterfly, Junonia stygia (Aurivillius, 1894), (Insecta: Lepidoptera: Nymphalidae).

Project description:The brown pansy, Junonia stygia (Aurivillius, 1894) (Lepidoptera: Nymphalidae), is a widespread West African forest butterfly. Genome skimming by Illumina sequencing allowed assembly of a complete 15,233 bp circular mitogenome from J. stygia consisting of 79.5% AT nucleotides. Mitochondrial gene order and composition is identical to other butterfly mitogenomes. Junonia stygia COX1 features an atypical CGA start codon, while ATP6, COX1, COX2, ND4, and ND4L exhibit incomplete stop codons. Phylogenetic reconstruction supports a monophyletic Subfamily Nymphalinae, Tribe Junoniini, and genus Junonia. The phylogenetic tree places Junonia iphita and J. stygia as basal mitogenome lineages sister to the remaining Junonia sequences.

| S-EPMC7720999 | biostudies-literature

The complete mitochondrial genome of the Bermuda buckeye butterfly Junonia coenia bergi (Insecta: Lepidoptera: Nymphalidae).

Project description:The Bermuda buckeye, Junonia coenia bergi, is the only butterfly endemic to Bermuda, but is largely unstudied. Whole-genome Illumina sequencing was used to obtain a complete circular mitochondrial genome sequence of 15,221 bp consisting of 22 tRNAs, 13 protein-coding genes, 2 rRNAs and a control region. Mitogenome structure and organization was found to be very similar to that of other Junonia butterfly mitogenomes. Excluding ambiguous nucleotides, the J. coenia bergi mitogenome is 99.1% identical to the J. coenia coenia mitogenome. Parsimony and maximum-likelihood phylogenetic reconstruction revealed the monophyly of subfamily Nymphalinae, genus Junonia, and species J. coenia.

| S-EPMC7800380 | biostudies-literature

Complete mitochondrial genome of Mycalesis intermedia (Lepidoptera: Nymphalidae).

Project description:The Mycalesis intermedia belongs to Nymphalidae in Lepidoptera. We described the complete mitogenome of M. intermedia, which is typical circular duplex molecules and 15,386 bp in length, containing the standard metazoan set of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an A + T-rich region with macro-repeat sequences. All the inferred tRNA secondary structures show the common cloverleaf pattern, with the exception of trnS1(AGN) which lacks the DHU arm. The M. intermedia mitochondrial genome has the same gene order with other lepidopterans.

| S-EPMC7748658 | biostudies-literature

The complete mitochondrial genome of Apatura laverna (lepidoptera: Nymphalidae).

Project description:Apatura laverna is subordinate to Apatura Fabricius of Nymphalidae, and endemic to China. The complete mitochondrial genome of A. laverna was sequenced and analyzed in the study. The length of the complete mitogenome is 15,187 bp, including 37 genes and a control region. COI gene initiate with a CGA codon, the rest 12 genes start with typical ATN. Eleven of 13 PCGs have a complete stop codon TAN except for COII and ND4 have a single T. The phylogenetic analyses support that A. laverna has a close relationship with the clade including A. metis and A. ilia.

| S-EPMC8425737 | biostudies-literature

The complete mitochondrial genome of Aglais ladakensis (Lepidoptera: Nymphalidae: Nymphalinae).

Project description:We describe the mitogenome sequence of alpine butterfly Aglais ladakensis (Lepidoptera: Nymphalidae: Nymphalinae) collected from the Qilianshan Mountain, Gansu province, China. The molecule is 15,222 bp in length, containing 37 typical insect mitochondrial genes and one AT-rich region. All protein-coding genes (PCGs) start with ATN codons, except for COI gene with CGA, which is often found in other butterflies. In addition, seven PCGs harbor the typical stop codon TAA, whereas six PCGs terminate with TA or T. The rrnL and rrnS genes are 1316 bp and 735 bp in length, respectively. The AT-rich region is 394 bp in size and harbors several features characteristic of the lepidopterans, including the motif ATAGA followed by a 19 bp poly-T stretch and a microsatellite-like (TA)8 element. Phylogenetic analysis shows that the Qinghai-Tibet Plateau (QTP) distributed A. ladakensis of this study is closely related to the A. milberti, which is the only Aglais species that occurs in the alpine caves of North America.

| S-EPMC7748854 | biostudies-literature

The complete mitochondrial genome of comma, polygonia c-aureum (Lepidoptera: Nymphalidae: Nymphalinae).

Project description:The mitochondrial genome (mitogenome) of Polygonia c-aureum (Lepidoptera: Nymphalidae: Nymphalinae) is determined to be 15,209?bp in length and shows AT bias (80.6%). Similar to other butterflies, it contains 37 typical mitochondrial genes and one AT-rich region (D-loop). All protein-coding genes (PCGs) started with ATN, except for cox1 gene with CGA(R), which is often found in other butterflies, and seven PCGs harbour the typical stop codon TAA, whereas cox1, cox2, nad3, nad5, nad4 and nad1 end with a single T. The rrnL and rrnS genes are 1332?bp and 773?bp in length, respectively. The 342?bp AT-rich region contains non-repetitive sequences, but harbour several features common to the lepidopterans, including the motif ATAGA followed by a 19-bp poly-T stretch and a microsatellite-like (TA)8 element preceded by the ATTTA motif. The complete mitogenome sequence provided here would be useful for further understanding the taxonomy and phylogeny of Nymphalinae.

| S-EPMC7799567 | biostudies-literature

Complete mitochondrial genome of Lelecella limenitoides (Lepidoptera: Nymphalidae: Apaturinae) and phylogenetic implication.

Project description:The length of Lelecella limenitoides complete mitogenome was 15,203 bp and contained the typical gene arrangement, base composition, and codon usage found in other related species. The overall base composition exhibited obvious anti-G (7.5%) and AT bias (81.6%). The initiation codons of all PCGs were typical ATN (ATA/ATG/ATT), and the termination codons were TAA, TAG, or incomplete stop codon T-. All tRNAs could be folded into typical cloverleaf secondary structures, except tRNASer (AGN). Phylogenetic analysis showed that L. limenitoides was clustered with the clade of Sasakia, Euripus, and Apatura.

| S-EPMC7510825 | biostudies-literature

Complete mitochondrial genome of the summer heath fritillary butterfly, Mellicta ambigua (Lepidoptera: Nymphalidae).

Project description:We sequenced the mitochondrial genome (mitogeome) of the summer heath fritillary bullterfly, Mellicta ambigua Ménétriès, 1859 (Lepidoptera: Nymphalidae), which is listed as an endangered insect in South Korea. The 15,205-bp long complete genome contained 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes, and 1 A + T-rich region with an arrangement identical to that observed in most insect mitogenomes. Unlike the other PCGs, COI had the atypical CGA start codon frequently found in lepidopteran COI. The A/T content of the whole mitogenome was 80.57%; however, it varied among the regions/genes as follows: A + T-rich region, 93.39%; srRNA, 85.37%; lrRNA, 84.92%; tRNAs, 81.13%; and PCGs, 79.22%. Phylogenetic analyses using concatenated sequences of the 13 PCGs and 2 rRNAs placed M. ambigua as a sister group to the within-tribe species, Melitaea cinxia, with the highest nodal support both in the maximum-likelihood (ML) and Bayesian inference (BI) methods.

| S-EPMC8118395 | biostudies-literature

The complete mitochondrial genome sequence of Coenonympha amaryllis and monophyly of Satyrinae (Lepidoptera: Nymphalidae).

Project description:The complete mitochondrial genome (mitogenome) of a Satirid species Coenonympha amaryllis was assembled and annotated. The mitogenome is a DNA molecule of 15125 bp, and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs, 2 rRNAs, and 1 A-T rich region. The nucleotide composition biases toward A and T is 79.4% of the entirety, which is a typical structure of Lepidopterans. All PCGs started with ATN, except cox1, which started with CGA, 8 PCGs stop with TAN and 5 genes exhibited incomplete stop codon. Phylogenetic analysis revealed that Satyrinae is a monophyletic group and Coenonympha (C. amaryllis) as sister of the genus Triphysa (T. phryne).

| S-EPMC7510812 | biostudies-literature

The complete mitochondrial genome of the Jackson's leaf butterfly Mallika jacksoni (Insecta: Lepidoptera: Nymphalidae).

Project description:The Jackson's leaf butterfly Mallika jacksoni (Sharpe 1896), is a leaf-mimicking species from tropical East Africa. Genome skimming by Illumina sequencing permitted the assembly of the complete circular M. jacksoni 15,183 bp mitogenome. It consists of 79.4% AT nucleotides, 22 tRNAs, 13 protein-coding genes, 2 rRNAs, and a control region in the typical butterfly gene order. Mallika jacksoni COX1 has a CGA start codon while ATP6, COX1, COX2, ND3, ND4, and ND5 exhibit partial stop codons completed by 3'-A residues added to the mRNA. Phylogenetic reconstruction places M. jacksoni as sister to Kallima within nymphalid tribe Kallimini.

| S-EPMC7782007 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data