Unknown

Dataset Information

0

The Methylation Pattern for Knee and Hip Osteoarthritis.


ABSTRACT: Osteoarthritis is one of the most prevalent chronic joint diseases for middle-aged and elderly people. But in recent years, the number of young people suffering from the disease increases quickly. It is known that osteoarthritis is a common degenerative disease caused by the combination and interaction of many factors such as natural and environmental factors. DNA methylations reflect the effects of environmental factors. Several researches on DNA methylation at specific genes in OA cartilage indicated the great potential roles of DNA methylation in OA. To systematically investigate the methylation pattern in knee and hip osteoarthritis, we analyzed the methylation profiles in cartilage of 16 OA hip samples, 19 control hip samples and 62 OA knee samples. 12 discriminative methylation sites were identified using advanced minimal Redundancy Maximal Relevance (mRMR) and Incremental Feature Selection (IFS) methods. The SVM classifier of these 12 methylation sites from genes like MEIS1, GABRG3, RXRA, and EN1, can perfectly classify the OA hip samples, control hip samples and OA knee samples evaluated with LOOCV (Leave-One Out-Cross Validation). These 12 methylation sites can not only serve as biomarker, but also provide underlying mechanism of OA.

SUBMITTER: Wu Z 

PROVIDER: S-EPMC7677303 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

altmetric image

Publications

The Methylation Pattern for Knee and Hip Osteoarthritis.

Wu Zhen Z   Shou Lu L   Wang Jian J   Huang Tao T   Xu Xinwei X  

Frontiers in cell and developmental biology 20201106


Osteoarthritis is one of the most prevalent chronic joint diseases for middle-aged and elderly people. But in recent years, the number of young people suffering from the disease increases quickly. It is known that osteoarthritis is a common degenerative disease caused by the combination and interaction of many factors such as natural and environmental factors. DNA methylations reflect the effects of environmental factors. Several researches on DNA methylation at specific genes in OA cartilage in  ...[more]

Similar Datasets

2019-01-07 | E-MTAB-7313 | biostudies-arrayexpress
2015-09-02 | GSE63695 | GEO
| PRJEB29598 | ENA
| S-EPMC7534409 | biostudies-literature
| S-EPMC6388567 | biostudies-literature
2018-05-14 | PXD006673 | Pride
| S-EPMC4590943 | biostudies-literature
| S-EPMC4314681 | biostudies-literature
| S-EPMC8164770 | biostudies-literature
| S-EPMC5656924 | biostudies-literature