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The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis.

ABSTRACT: Lanxangia tsaoko is a famous Chinese traditional medicine with long history. In this study, the complete chloroplast (cp) genome of L. tsaoko was characterized and assembled using a high-throughput sequencing method. The complete cp genome is 164,008 bp in length, including a large single copy (LSC) region of 89,134 bp and a small single copy (SSC) region of 15,372 bp separated by two inverted repeat (IR) regions of 29,751 bp. A total of 137 genes were identified, including 88 protein-coding genes (PCG), 38 transfer RNA genes, 8 ribosomal RNA genes, and 3 pseudogenes. The phylogenetic analysis revealed that L. tsaoko is located in Zingiberaceace, closely related to Amomum and Alpinia with a 100% bootstrap support.

SUBMITTER: Meng J

PROVIDER: S-EPMC7687529 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature

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The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis.

Meng Jing J Jiang Hui H He Jun J He Yonghong Y Zhang Yuwen Y Zhao Yan Y

Mitochondrial DNA. Part B, Resources 20190711 2

Lanxangia tsaoko is a famous Chinese traditional medicine with long history. In this study, the complete chloroplast (cp) genome of L. tsaoko was characterized and assembled using a high-throughput sequencing method. The complete cp genome is 164,008 bp in length, including a large single copy (LSC) region of 89,134 bp and a small single copy (SSC) region of 15,372 bp separated by two inverted repeat (IR) regions of 29,751 bp. A total of 137 genes were identified, including 88 prot ...[more]

PMID: 33365524

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