Dataset Information

The complete mitochondrial genome of a euphausiid species: Pseudeuphausia sinica (Euphausiacea: Euphausiidae).

ABSTRACT: We describe the mitogenome sequence of Pseudeuphausia sinica collected in the adjacent waters of the Yangtze River Estuary. The assembled mitogenome is 16,192?bp in length and consists 13 protein-coding genes, 22 transfer-RNA genes, 2 ribosomal-RNA genes, and 1 non-coding region. The most common start codon for 13 PCGs is ATG and the most common termination codon is TAA. The overall G?+?C content was only 28.26% in the heavy strand. The result of phylogenetic analysis showed that the relationship of P. sinica was close to the species in the same order.

SUBMITTER: Wang X

PROVIDER: S-EPMC7687610 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature

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Publications

The complete mitochondrial genome of a euphausiid species: <i>Pseudeuphausia sinica</i> (Euphausiacea: Euphausiidae).

Wang Xiao X Zhang Xuelei X Zheng Fengrong F Jiang Meijie M

Mitochondrial DNA. Part B, Resources 20190710 2

We describe the mitogenome sequence of <i>Pseudeuphausia sinica</i> collected in the adjacent waters of the Yangtze River Estuary. The assembled mitogenome is 16,192 bp in length and consists 13 protein-coding genes, 22 transfer-RNA genes, 2 ribosomal-RNA genes, and 1 non-coding region. The most common start codon for 13 PCGs is ATG and the most common termination codon is TAA. The overall G + C content was only 28.26% in the heavy strand. The result of phylogenetic analysis showed that the rela ...[more]

PMID: 33365420

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Project description:The Chinese cordyceps, a parasitic Ophiocordyceps sinensis fungus-Thitarodes/Hepialus larva complex, is a valuable biological resource endemic to the Tibetan Plateau. Protection of the Plateau environment and huge market demand make it necessary to culture this complex in an artificial system. A method for the large-scale artificial rearing of the Thitarodes/Hepialus insect host has been established. However, the deterioration of the insect rearing population and low mummification of the infected larvae by the fungus constrain effective commercial cultivation. Hybridization of Thitarodes/Hepialus populations may be needed to overcome this problem. The species T. shambalaensis (GG♂ × GG♀) and an undescribed Thitarodes species (SD♂ × SD♀) were inbred or hybridized to evaluate the biological parameters, larval sensitivity to the fungal infection and mitochondrial genomes of the resulting populations. The two parental Thitarodes species exhibited significant differences in adult fresh weights and body lengths but not in pupal emergence rates. Hybridization of T. shambalaensis and Thitarodes sp. allowed producing a new generation. The SD♂ × GG♀ population showed a higher population trend index than the SD♂ × SD♀ population, implying increased population growth compared with the male parent. The sensitivity of the inbred larval populations to four fungal isolates of O. sinensis also differed. This provides possibilities to create Thitarodes/Hepialus populations with increased growth potential for the improved artificial production of the insect hosts. The mitochondrial genomes of GG♂ × GG♀, SD♂ × SD♀ and SD♂ × GG♀ were 15,612 bp, 15,389 bp and 15,496 bp in length, with an A + T content of 80.92%, 82.35% and 80.87%, respectively. The A + T-rich region contains 787 bp with two 114 bp repetitive sequences, 554 bp without repetitive sequences and 673 bp without repetitive sequences in GG♂ × GG♀, SD♂ × SD♀ and SD♂ × GG♀, respectively. The hybrid population (SD♂ × GG♀) was located in the same clade with GG♂ × GG♀, based on the phylogenetic tree constructed by 13 PCGs, implying the maternal inheritance of mitochondrial DNA.

Dataset Information

The complete mitochondrial genome of a euphausiid species: Pseudeuphausia sinica (Euphausiacea: Euphausiidae).

Publications

The complete mitochondrial genome of a euphausiid species: <i>Pseudeuphausia sinica</i> (Euphausiacea: Euphausiidae).

Similar Datasets

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