Browse
Submit Data
Databases
API
Help

Dataset Information

14 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Aparapotamon similium (Decapoda: Brachyura), an endemic to China.

ABSTRACT: In this study, we first obtained the complete mitochondrial genome of Aparapoamon similium (Decapoda: Brachyura). The complete mitochondrial genome is 19,236?bp in length and includes 37 typical genes (13 protein-coding genes, 22 tRNAs genes, 2 rRNAs genes, and 1 putative control region). The whole mitochondrial genome is characterized by the apparent AT bias (72.82%). BI and ML phylogenetic analysis based on 67 mitochondrial genomes of Brachyura species show a highly similar topology structure with high bootstrap supported. The results reveal the close relationship between A. similium and Potamiscus motuoense. This study would establish a solid data foundation for further diversification studies.

SUBMITTER: Liu H

PROVIDER: S-EPMC7687617 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of Aparapotamon similium (Decapoda: Brachyura), an endemic to China.

Liu Huimeng H Jiang Fengjuan F Xu Shuxin S Zhu Chunchao C Zhou Xianmin X Zou Jiexin J

Mitochondrial DNA. Part B, Resources 20190713 2

In this study, we first obtained the complete mitochondrial genome of Aparapoamon similium (Decapoda: Brachyura). The complete mitochondrial genome is 19,236 bp in length and includes 37 typical genes (13 protein-coding genes, 22 tRNAs genes, 2 rRNAs genes, and 1 putative control region). The whole mitochondrial genome is characterized by the apparent AT bias (72.82%). BI and ML phylogenetic analysis based on 67 mitochondrial genomes of Brachyura species show a highly similar topology str ...[more]

PMID: 33365592

Similar Datasets

The complete mitochondrial genome of freshwater crab Sinopotamon xiushuiense (Decapoda: brachyura: Potamoidea).

Project description:We report for the first time the complete mitochondrial genome of Sinopotamon xiushuiense, which is found to be 18,460?bp in length, and contains 13 protein-coding genes (PCGs), 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA), and 1 non-coding region known as the D-loop. In addition, the mitogenome has 18 intergenic regions ranging from 1 to 1221?bp in length. The complete mitogenome of S. xiushuiense is the longest among brachyurans reported in GenBank before November 2015, and its AT content is slightly lower than that in Geotholphusa dehaani. The mitogenome data provides a basis for further studies on population genetics and phylogenetics.

| S-EPMC7800110 | biostudies-literature

The complete mitochondrial genome of the freshwater crab Sinolapotamon patellifer (Decapoda: Brachyura: Potamoidea).

Project description:We report the complete mitochondrial genome of Sinolapotamon patellifer for the first time, which is found to be 16,547 base pairs in length, and contains 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA), and one non-coding AT-rich region known as the D-loop. In addition, the mitogenome has 17 intergenic regions ranging from 1 to 1512?bp in length. The mitochondrial genome of S. patellifer is the first mitochondrial genome under the genus Sinolapamon, providing DNA data for species identification, enriching the species diversity of Brachyura, and providing a basis for further studies on population genetics and phylogenetics.

| S-EPMC7687422 | biostudies-literature

The complete mitochondrial genome and phylogenetic analysis of Matuta planipes (Decapoda: Brachyura: Matutidae).

Project description:The complete mitochondrial genome of Matuta planipes was obtained using long and conventional PCR method. The circular genome was 15,760?bp in length, consisting of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a control region. Of the 37 genes, 23 were encoded by the heavy strand, while the others were encoded by the light strand. The genome composition with A?+?T bias (70.82%) and gene arrangement were largely identical to those observed in most arthropods, such as the mud crab (Scylla paramamosain). The phylogenetic analysis suggested that M. planipes was closest to Ashtoret lunaris. The newly described mitochondrial genome may provide valuable data for phylogenetic analysis for Matutidae.

| S-EPMC7800499 | biostudies-literature

The complete mitochondrial genome of the freshwater crab Potamiscus motuoensis (Decapoda: Brachyura: Potamoidea).

Project description:Potamiscus motuoensis is the only one freshwater crab species distributed in Yarlung Zangbo River Grand Canyon and its complete mitochondrial genome was obtained for the first time. The complete mitochondrial genome of P. motuoensis is 17,971 bp in length, including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 1 control region. In addition, the mitogenome has 19 noncoding regions ranging from 1 to 1396 bp in length. The report of the mitochondrial genome will enrich the species diversity of Yarlung Zangbo River Grand Canyon and provide data support for further research.

| S-EPMC7748482 | biostudies-literature

The complete mitochondrial genome of the freshwater crab Chinapotamon maolanense (Decapoda: Brachyura: Potamoidea).

Project description:The complete mitochondrial genome of Chinapotamon maolanense was obtained for the first time. The complete mitochondrial genome of C. maolanense is 17,130 bp in length, including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 1 control region. In addition, the mitogenome has 18 noncoding regions ranging from 1 to 1553 bp in length.

| S-EPMC7782061 | biostudies-literature

The complete mitochondrial genome of the freshwater crab Neilupotamon xinganense (Decapoda: Brachyura: Potamoidea).

Project description:In this study, we first obtained the complete mitochondrial genome of Neilupotamon xinganense (Decapoda: Brachyura: Potamoidea). The genome is 16,965 bp in length and typically consists of 37 genes (13 protein-coding genes, 22 tRNAs genes, two rRNAs genes, and one putative control region). In addition, the mitogenome has 20 non-coding regions ranging from 1 to 683 bp in length. This study provides DNA data for further researches on population genetics and phylogenetics.

| S-EPMC7783068 | biostudies-literature

The complete mitochondrial genome of Varuna yui (Decapoda: Brachyura: Varunidae) and its phylogeny.

Project description:The complete mitochondrial genome plays an important role in the research on phylogenetic relationship. Here, we reported the first complete mitochondrial genome sequence of Varuna yui Hwang & Takeda, 1986 (Varunidae). The complete mtDNA (15,915 bp in length) consisted of 13 protein-coding genes, 22 tRNAs, two rRNA genes, and a control region. The gene arrangement was identical to those observed in the Varunidae species. The phylogenetic analysis suggested that V. yui had close relationship with other Varunidae species (Helicetient sinensis, Eriocher sinesis, etc.). The newly described genome may facilitate further comparative mitogenomic analysis within Varunidae species.

| S-EPMC7799475 | biostudies-literature

Characterization of the complete mitochondrial genome of Xanthid crab, Atergatis integerrimus from China (Decapoda: Brachyura) and its phylogenetic analysis.

Project description:The complete mitochondrial genome sequence of Atergatis integerrimus from China has been amplified and sequenced in this study. The mitogenome assembly was found to be 15,924 bp in length with base composition of A (32.88%), G (10.58%), C (20.87%), T (35.66%), A + T (68.54%), and G + C (31.46%). It contained 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and a control region. The phylogenetic position was constructed and the A. integerrimus was closely clustered with Pseudocarcinus gigas and Leptodius sanguineus. The complete mitochondrial genome sequence would be useful for further understanding the evolution of A. integerrimus.

| S-EPMC7800503 | biostudies-literature

The complete mitochondrial genome of the swimming crab Charybdis natator (Herbst) (Decapoda: Brachyura: Portunidae) and its phylogeny.

Project description:The complete mitochondrial genome of Charybdis natator (family Portunidae) was obtained using Illumina and Sanger dideoxy sequencing. This genome was a typically circular molecule with a length of 15,664?bp and encoded 13 protein-coding genes, 22 transfer RNA genes and 2 ribosomal RNA genes. The overall base composition of this mitogenome was 34.00% for A, 11.06% for G, 36.36% for T, and 18.58% for C, respectively, with a higher A?+?T content (70.36%). The gene composition and arrangement were accordant to the closely published species. The phylogenetic analysis suggested that C. natator had the closest relationship with C. japonica.

| S-EPMC7799874 | biostudies-literature

The complete mitochondrial genome of the freshwater crab Bottapotamon lingchuanense Turkay and Dai 1997 (Decapoda: Brachyura: Potamoidea).

Project description:We report the complete mitochondrial genome of Bottapotamon lingchuanense for the first time, which is found to be 17,612 base pairs in length, and contains 13 protein-coding genes (PCGs), 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA), and 1 non-coding AT-rich region known as the D-loop. In addition, the mitogenome has 17 intergenic regions ranging from 1 to 1512 bp in length. The mitochondrial genome of B. lingchuanense is the first mitochondrial genome under the genus Bottapotamon, providing DNA data for species identification, enriching the species diversity of Brachyura. The maximum-likelihood (ML) tree and Bayesian inference (BI) tree based on the 13 PCGs of mitochondrial genome of Brachyura species showed similar topologies with high confidence, and the analysis results were consistent with the current mainstream classification system. The results indicating that B. lingchuanense is closely related to Neilupotamon sinense, Sinopotamon, and Tenuilapotamon, and it is likely to be derived from them.

| S-EPMC8079082 | biostudies-literature