Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete plastid genome sequence of a medical herb, Anisomeles indica (L.) Kuntze (Lamiaceae).

ABSTRACT: The species Anisomeles indica is used medicinally and widely distributed from India, to China and the Indo-China Peninsula. The first complete plastid genome sequence of A. indica reported here was 151,900?bp long, with the large single copy (LSC) region of 83,144?bp, the small single copy (SSC) region of 17,556?bp and two inverted repeats (IRa and IRb) of 25,600?bp. The plastome contained 113 genes, including 79 protein-coding genes, 4 ribosomla RNA genes and 30 transfer RNA genes. The overall GC content was 38.26%. Result from phylogenetic analysis suggests that Anisomeles is closely related to the genus Pogostemon.

SUBMITTER: Yao G

PROVIDER: S-EPMC7706994 | biostudies-literature | 2019 Aug

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete plastid genome sequence of a medical herb, Anisomeles indica (L.) Kuntze (Lamiaceae).

Yao Gang G Huang Jiuxiang J Li Yuling Y

Mitochondrial DNA. Part B, Resources 20190827 2

The species Anisomeles indica is used medicinally and widely distributed from India, to China and the Indo-China Peninsula. The first complete plastid genome sequence of A. indica reported here was 151,900 bp long, with the large single copy (LSC) region of 83,144 bp, the small single copy (SSC) region of 17,556 bp and two inverted repeats (IRa and IRb) of 25,600 bp. The plastome contained 113 genes, including 79 protein-coding genes, 4 ribosomla RNA genes and 30 transfer RNA genes ...[more]

PMID: 33365726

Similar Datasets

Complete genome sequence of Beijerinckia indica subsp. indica.

Project description:Beijerinckia indica subsp. indica is an aerobic, acidophilic, exopolysaccharide-producing, N(2)-fixing soil bacterium. It is a generalist chemoorganotroph that is phylogenetically closely related to facultative and obligate methanotrophs of the genera Methylocella and Methylocapsa. Here we report the full genome sequence of this bacterium.

| S-EPMC2937395 | biostudies-literature

Complete plastid genome sequence of Oberonioides microtatantha (Schltr.) Szlach. (Orchidaceae), an endemic herb in China.

Project description:The species Oberonioides microtatantha, belonging to the family Orchidaceae, is a small lithophytic herb endemic in south China with significant conservation values. The complete plastid genome sequence of O. microtatantha reported here is 144,989 bp in length, with a large single copy (LSC) region of 83,920 bp, a small single copy (SSC) region of 13,063 bp, and a pair of inverted repeat (IRa and IRb) regions of 24,003 bp each. The plastome consists of 95 genes, including 72 protein-coding genes, 4 ribosomal RNA genes, and 19 transfer RNA genes. The overall GC content is 36.81%. Phylogenetic analysis placed Oberonioides closet to the genus Liparis in Orchidaceae.

| S-EPMC7928061 | biostudies-literature

Complete plastid genome sequence of the rare and endangered medicinal herb Psammosilene tunicoides, endemic to China.

Project description:Psammosilene tunicoides W.C. Wu et C.Y. Wu, a monotypic species and endemic to Southwest China, is a rare and endangered traditional medicinal herb with satisfactory effects on multifold pathology. In order to provide crucial data for protection, we reported and analyzed the complete plastid genome of P. tunicoides as the foundation of germplasm conservation. The complete plastid genome is a typical quadripartite circular molecule of 153,957 bp in length, including a large single copy (LSC) region of 83,972 bp and a small single copy (SSC) region of 17,495 bp separated by two inverted repeat (IR) regions of 26,245 bp. In total of 111 unique genes were predicted, including 78 protein-coding genes (PCGs), 29 transfer RNA genes, and four ribosomal RNA genes. The overall GC content of P. tunicoides is 36.5%. The phylogenetic analysis revealed that P. tunicoides and Dianthus caryophyllus formed an independent clade with a 100% bootstrap support.

| S-EPMC7687624 | biostudies-literature

The complete chloroplast genome of Phlomoides younghushandii (Lamiaceae), a traditional Tibetan medicinal herb.

Project description:The species Phlomoides younghushandii is a medicinal herb mainly distributed in southwest China. The first complete plastid genome sequence of P. younghushandii reported here was 151,747 bp long, with the large single copy (LSC) region of 83,181 bp, the small single copy (SSC) region of 17,372 bp and two inverted repeats (IRa and IRb) of 25,597 bp. The plastome contained 114 genes, including 80 protein-coding genes, four encoding rRNAs, and 30 encoding tRNAs. The overall GC content was 38.5%. Phylogenetic analysis of Lamiaceae based on a whole plastome matrix suggested that Phlomoides is closely related to the genus Phlomis as members of subfamily Lamioideae.

| S-EPMC7995819 | biostudies-literature

The complete chloroplast genome of Phlomoides betonicoides (Lamiaceae), a traditional Tibetan medicinal herb.

Project description:The species Phlomoides betonicoides is used medicinally and mainly distributed in southwest China. The first complete plastid genome sequence of P. betonicoides reported here was 151,777 bp long, with the large single copy (LSC) region of 83,205 bp, the small single copy (SSC) region of 17,370 bp and two inverted repeats (IRa and IRb) of 25,601 bp. The plastome contained 114 genes, including 80 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content was 38.5%. Result from phylogenetic analysis suggests that tribe Phlomideae (Phlomoides) is closely related to tribe Lamieae and tribe Leonureae in present study.

| S-EPMC7721044 | biostudies-literature

Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), an endangered medical herb endemic to south-western China.

Project description:Psammosilene tunicoides is an endangered medical herb endemic to south-western China. In this study, the complete plastid genome of the species was characterized and assembled using the next-generation DNA sequencing method. The plastid genome is 153,978?bp in length, including a large single copy (LSC) region of 83,981?bp and a small single copy (SSC) region of 17,489?bp, which were separated by a pair of inverted repeat (IR) regions of 26,254?bp. The genome encoded 112 unique genes, including 78 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content of the whole genome is 36.49%. The phylogenetic analysis based on 17 plastid genome of Caryophyllaceae revealed that P. tunicoides nested within the tribe Caryophylleae with strong support value.

| S-EPMC7706586 | biostudies-literature

Characterization of the complete plastid genome of Chinese medicinal plant Isodon serra (Lamiaceae).

Project description:The herb Isodon serra (Maximowicz) Kudô, which is widely distributed in China and its neighbor regions, is a well-known traditional Chinese medicinal plant. In this study, we characterized the complete plastid genome sequence of I. serra using Illumina sequencing data. The plastome is 152,676 bp in length and contains a typical quadripartite structure. The inverted repeat (IR), large-single copy (LSC) and small-single copy (SSC) regions each has 25,716 bp, 83,564 bp, and 17,680 bp. The genome contains 80 protein coding genes (PCGs), 30 transfer RNAs (tRNA), and four ribosomal RNAs (rRNA). The phylogenetic result indicates I. serra together with genera Ocimum and Lavandula formed tribe Ocimeae clade.

| S-EPMC7510653 | biostudies-literature

The complete mitochondrial genome sequence of Aulacophora indica.

Project description:Aulacophora indica has been intensively studied since it can cause serious damage to cucurbits. Here, we reported the complete mitochondrial genome of A. indica for the first time. The mitochondrial genome is 15,730 bp in length and contained 13 protein-coding genes (PCGs), 2 rRNAs, 22 tRNAs, and an AT-rich control region. Phylogenetic tree indicated that A. indica is more closely related to Aulacophora lewisii than other Galerucinae beetles.

| S-EPMC7748638 | biostudies-literature

The complete chloroplast genome sequence of the medicinal plant, Dracocephalum rupestre (Lamiaceae)

Project description:Abstract Dracocephalum rupestre (tribe Mentheae; Lamiaceae) is a perennial herb from Korea and China with high ornamental and medicinal value. Here, we report its complete chloroplast genome to provide insight into the phylogenetic relationships of Dracocephalum. The genome is 151,230 bp long, with two inverted repeat regions (25,643 bp each) that separate a large single-copy region (82,536 bp) and a small single-copy region (17,408 bp). It contains 133 genes that encode 88 proteins, eight rRNAs, and 37 tRNAs. The maximum-likelihood phylogenetic analysis strongly supported Dracocephalum monophyly, showing that the genus forms a sister group with the subtribe Menthinae in the tribe Mentheae.

| S-EPMC9902028 | biostudies-literature

Characterization of the complete plastid genome of Craniotome Rchb., a monotypic genus of Pogostemoneae, Lamiaceae.

Project description:Craniotome Rchb. is a monotypic genus of Lamiaceae. In this study, the complete plastid genome of the species C. furcata (Link) Kuntze was sequenced and assembled. The plastid genome obtained is 152,521 bp in length, including a pair of inverted repeat (IRa and IRb) regions of 25,596 bp, a large single-copy (LSC) region of 83,690 bp, and a small single-copy (SSC) region of 17,639 bp. The genome encoded 113 unique genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content of the genome obtained is 38.29%. The phylogenetic analysis based on 37 plastid genome of Lamiaceae revealed that the genus Craniotome was sister to the Anisomeles-Pogostemon clade with strong support.

| S-EPMC7782610 | biostudies-literature