Dataset Information

Characterization of the complete mitochondrial genome sequence of orangeline wrasse Halichoeres hartzfeldii (Bleeker, 1852) with the phylogenetic relationships within the Labridae species.

ABSTRACT: The mitogenome of Halichoeres hartzfeldii is 16,481 bp in length. It consists of 37 typical vertebrate mitochondrial genes including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA), 2 ribosomal RNA (rRNA) genes, and a control region (D-loop). The orientation and arrangement of these genes is similar to that of the other sequenced Labridae mitogenome. The overall base composition of the mitogenome of H. hartzfeldii is biased towards A +T content at 52.9%. Phylogenetic analysis based on 13 concatenated PCGs nucleotide sequences indicated that the genome of H. hartzfeldii is closely related to the genus Halichoeres.

SUBMITTER: Guo HY

PROVIDER: S-EPMC7707247 | biostudies-literature | 2019 Sep

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Characterization of the complete mitochondrial genome sequence of orangeline wrasse <i>Halichoeres hartzfeldii</i> (Bleeker, 1852) with the phylogenetic relationships within the Labridae species.

Guo Hua-Yang HY Zhang Nan N Zhu Ke-Cheng KC Liu Bao-Suo BS Guo Liang L Yang Jing-Wen JW Zhang Dian-Chang DC

Mitochondrial DNA. Part B, Resources 20190926 2

The mitogenome of <i>Halichoeres hartzfeldii</i> is 16,481 bp in length. It consists of 37 typical vertebrate mitochondrial genes including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA), 2 ribosomal RNA (rRNA) genes, and a control region (D-loop). The orientation and arrangement of these genes is similar to that of the other sequenced Labridae mitogenome. The overall base composition of the mitogenome of H. hartzfeldii is biased towards A +T content at 52.9%. Phylogenetic analysis based ...[more]

PMID: 33365943

Similar Datasets

Project description:Complete mitochondrial genomes (mitogenomes) of two cockroach species, Periplaneta australasiae and Neostylopyga rhombifolia, 15,605 bp and 15,711 bp in length, respectively, were determined. As reported for other cockroach mitogenomes, the two mitogenomes possessed typical ancestral insect mitogenome gene composition and arrangement. Only several small intergenic spacers were found: one, which was common in all sequenced cockroach mitogenomes except for the genus Cryptocercus, was between tRNA-Ser (UCN) and ND1 and contained a 7bp highly conserved motif (WACTTAA). Three different types of short tandem repeats in the N. rhombifolia control region (CR) were observed. The homologous alignments of these tandem repeats with other six cockroach mitogenome CRs revealed a low similarity. Three conserved sequence blocks (CSB) were detected in both cockroach mitochondrial CRs. CSB1 was specific for blattinine mitogenomes and was highly conserved with 95% similarity, speculating that this block was a possible molecular synapomorphy for this subfamily. CSB3 located nearby downstream of CSB1 and has more variations within blattinine mitogenomes compared with CSB1. The CSB3 was capable of forming stable stem-loop structure with a small T-stretch in the loop portion. We assessed the influence of four datasets and two inference methods on topology within Orthopteroidea. All genes excluding the third codon positions of PCGs could generate more stable topology, and higher posterior probabilities than bootstrap values were presented at some branch nodes. The phylogenetic analysis with different datasets and analytical methods supported the monophyly of Dictyoptera and supported strongly the proposal that Isoptera should be classified as a family (Termitidae) of the Blattaria. Specifically, Shelfordella lateralis was inserted in the clade Periplaneta. Considering the K2P genetic distance, morphological characters, and the phylogenetic trees, we suggested that S. lateralis should be placed in the genus Periplaneta.

Dataset Information

Characterization of the complete mitochondrial genome sequence of orangeline wrasse Halichoeres hartzfeldii (Bleeker, 1852) with the phylogenetic relationships within the Labridae species.

Publications

Characterization of the complete mitochondrial genome sequence of orangeline wrasse <i>Halichoeres hartzfeldii</i> (Bleeker, 1852) with the phylogenetic relationships within the Labridae species.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure