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Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa.

ABSTRACT: The complete chloroplast (cp) genome sequence of Actinidia setosa (A. setosa) was sequenced and assembled into a circular genome of 156,728?bp length using Illumina paired-end data. The cp genome composed of a pair of 24,090?bp inverted repeat (IR) regions separated by a large single copy region (LSC) of 88,256?bp and a small single copy region (SSC) of 20,292?bp. Additionally, a total of 131 genes, including 85 protein-coding genes, 38 tRNA genes and 8 rRNA genes, were identified in the A. setosa cp genome. Phylogenetic analysis showed that A. setosa was evolutionarily close to other two kiwifruits A. deliciosa and A. chinensis.

SUBMITTER: Lin H

PROVIDER: S-EPMC7707611 | biostudies-literature | 2019 Oct

REPOSITORIES: biostudies-literature

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Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Actinidia setosa.

Lin Haifeng H Jiang Ling L Zhang Fuquan F Bai Di D

Mitochondrial DNA. Part B, Resources 20191021 2

The complete chloroplast (cp) genome sequence of Actinidia setosa (A. setosa) was sequenced and assembled into a circular genome of 156,728 bp length using Illumina paired-end data. The cp genome composed of a pair of 24,090 bp inverted repeat (IR) regions separated by a large single copy region (LSC) of 88,256 bp and a small single copy region (SSC) of 20,292 bp. Additionally, a total of 131 genes, including 85 protein-coding genes, 38 tRNA genes and 8 rRNA genes, were identified ...[more]

PMID: 33366140

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