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The complete chloroplast genome sequence of Casimiroa edulis.

ABSTRACT: The first complete chloroplast genome (cpDNA) sequence of Casimiroa edulis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,176?bp in length, contains a large single-copy region (LSC) of 87,536?bp and a small single-copy region (SSC) of 18,576?bp, which were separated by a pair of inverted repeats (IR) regions of 27,032?bp. The genome contains 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 38.2%, and the corresponding values of the LSC, SSC, and IR regions are 36.5, 33.0, and 42.9%, respectively. Further, phylogenomic analysis showed that C. edulis, Phellodendron amurense, and Zanthoxylum bungeanum clustered in a clade in family Rutaceae.

SUBMITTER: Yang D

PROVIDER: S-EPMC7707685 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

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The complete chloroplast genome sequence of Casimiroa edulis.

Yang Dejun D Qiu Qiong Q Xu Linhong L Xu Yumei Y Wang Yi Y

Mitochondrial DNA. Part B, Resources 20191112 2

The first complete chloroplast genome (cpDNA) sequence of Casimiroa edulis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,176 bp in length, contains a large single-copy region (LSC) of 87,536 bp and a small single-copy region (SSC) of 18,576 bp, which were separated by a pair of inverted repeats (IR) regions of 27,032 bp. The genome contains 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The over ...[more]

PMID: 33366279

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