Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete chloroplast genome sequence of Styrax odoratissimus (Styracaceae).

ABSTRACT: Styrax odoratissimus Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In this study, the complete chloroplast (cp) genome sequence of S. odoratissimus was determined by applying next-generation sequencing. The entire cp genome was determined to be 157,921 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 87,524 bp and 18,301 bp, respectively, which were separated by a pair of 26,048 bp inverted repeat (IR) regions. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of S. odoratissimus genome is 36.96% and the corresponding values in LSC, SSC, and IR regions are 34.80, 30.27, and 42.92%, respectively. A phylogenetic tree reconstructed by 31 chloroplast genomes reveals that S. odoratissimus is most related to Styrax grandiflorus Griffith.

SUBMITTER: Zhang Y

PROVIDER: S-EPMC7707729 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete chloroplast genome sequence of Styrax odoratissimus (Styracaceae).

Zhang Yaoqin Y Tong Lili L Xu Xiaogang X Zhao Zixun Z Wang Yabo Y

Mitochondrial DNA. Part B, Resources 20191114 2

Styrax odoratissimus Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In this study, the complete chloroplast (cp) genome sequence of S. odoratissimus was determined by applying next-generation sequencing. The entire cp genome was determined to be 157,921 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 87,524 bp and 18,301 bp, respectively, which were sep ...[more]

PMID: 33366313

Similar Datasets

The complete chloroplast genome sequence of Styrax obassia (Styracaceae).

Project description:Styrax obassia Siebold & Zucc. is a distinct member of the family Styracaceae with fragrant and beautiful flowers. In this study, we determined the complete chloroplast (cp) genome sequence of S. obassia in an effort to provide genomic resources useful for promoting its conservation. The circular genome of S. obassia was 157,910 bp in size and contained two inverted repeat (IRa and IRb) regions of 26,051 bp, which were separated by a large single copy (LSC) region of 87,528 bp, and a small single copy (SSC) region of 18,280 bp. A total of 133 genes are encoded, including 88 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content of S. obassia genome is 36.97%. The phylogenetic analysis suggests that S. obassia is a sister species to Styrax suberifolius and Styrax zhejiangensis in Styracaceae.

| S-EPMC7748812 | biostudies-literature

The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae).

Project description:Styrax serrulatus Roxburgh (William Roxburgh 1832), which plays an important role in ecology and economy, is a deciduous species of Styracaceae. In this paper, we sequenced, assembled, and annotated the chloroplast (cp) genome of S. serrulatus by using the sequencing data from Illumina Novaseq platform (Illumina, San Diego, CA). The complete cp genome of S. serrulatus is 157,929 base pairs (bp) in length, containing a pair of inverted repeat regions (IRs) of 26,048 bp each, a large single-copy (LSC) region of 87,552 bp, and a small single-copy (SSC) region of 18,281 bp. It contains 133 genes, including 8 rRNA genes, 37 tRNA genes, 87 protein-coding genes, and 1 pseudo gene. The GC content of S. serrulatus cp genome is 36.96%. The phylogenetic analysis suggests that S. serrulatus is a sister species to Styrax agrestis in Styracaceae.

| S-EPMC8567904 | biostudies-literature

The complete chloroplast genome sequence of Styrax duclouxii Perkins (Styracaceae).

Project description:The object of this work was to measure the complete chloroplast genome of Styrax duclouxii Perkins for the sake of offering valuable genomic information to promote its conservation. The circular genome of S. duclouxii was measured as 157,913 bp in size and contained two inverted repeat (IRa and IRb) regions of 26,040 bp, which were separated by a large single-copy (LSC) region of 87,604 bp and a small single copy (SSC) region of 18,229 bp. A total of 134 genes are encoded, including 89 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of Schizosaccharomyces japonicus genome is 36.97%. A phylogenetic tree reconstructed using 36 chloroplast genomes reveals that S. duclouxii is most closely related with Styrax zhejiangensis and Styrax faberi.

| S-EPMC7748768 | biostudies-literature

The complete chloroplast genome sequence of Styrax calvescens Perk. (Styracaceae).

Project description:Styrax calvescens Perk., is a nice tree, valued for its beauty and fragrance. Here, we characterized the complete chloroplast (cp) genome of S. calvescens using next-generation sequencing. The circular complete cp genome of S. calvescens is 157,951 bp in length, containing a large single-copy (LSC) region of 87,566 bp and a small single-copy (SSC) region of 18,289 bp. It comprises of 133 genes, including 8 rRNA genes, 37 tRNAs genes, and 88 protein-coding genes. The GC content of S. calvescens cp genome is 36.95%. The phylogenetic analysis suggests that S. calvescens is a sister species to Styrax grandiflorus Griffith in Styracaceae.

| S-EPMC7748754 | biostudies-literature

The complete chloroplast genome sequence of Styrax agrestis (Lour.) G. Don (Styracaceae).

Project description:Styrax agrestis (Lour.) G. Don, is a deciduous species of Styracaceae with beautiful shape, drooping flowers, and blooming like snow. Here, we characterized the complete chloroplast (cp) genome of S. agrestis using next generation sequencing. The circular complete cp genome of S. agrestis is 157,893 bp in length, containing a large single-copy (LSC) region of 87,512 bp, and a small single-copy (SSC) region of 18,285 bp. It comprises 136 genes, including eight rRNA genes, 37 tRNAs genes, 90 protein-coding genes, and one pseudo gene. The GC content of S. agrestis cp genome is 36.96%. The phylogenetic analysis suggests that S. agrestis is a sister species to Styrax faberi in Styracaceae.

| S-EPMC7954495 | biostudies-literature

The complete chloroplast genome of Styrax dasyanthus Perkins (Styracaceae).

Project description:In this work, next-generation sequencing was applied to measure the complete chloroplast genome of S. dasyanthus for the sake of offering valuable genomic information to promote its conservation. The complete chloroplast genome sequence of S. dasyanthus was measured as 157,501 bp in size. It contains the typical structure and gene content of angiosperm plastome, which includes a large single-copy (LSC), a small single-copy (SSC), and 2 inverted repeat (IR) regions of 87,130 bp, 18,277 bp, and 26,047 bp, respectively. The S. dasyanthus chloroplast genome has a total of 130 genes including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Overall, GC contents of the genome were 36.96%. Phylogenetic analysis based on the 29 chloroplast genome measurement demonstrated that S. dasyanthus is most closely related to Styrax grandiflours Griff.

| S-EPMC7748644 | biostudies-literature

The complete chloroplast genome of Styrax confusus Hemsl. (Styracaceae).

Project description:Styrax confusus Hemsl. is valued for its beauty and fragrance. Here, we characterized the complete chloroplast (cp) genome of S. confusus using next-generation sequencing. The circular complete cp genome of S. confusus was 157,981 bp in length, containing a large single-copy (LSC) region of 87,571 bp, and a small single-copy (SSC) region of 18,316 bp. It comprises 133 genes, including eight rRNA genes, 37 tRNA genes, and 88 protein-coding genes. The GC content of S. confusus cp genome is 36.95%. A phylogenetic tree reconstructed by 30 chloroplast genomes reveals that S. confusus is mostly related to Styrax calvescens Perk.

| S-EPMC7748495 | biostudies-literature

The complete chloroplast genome of Styrax faberi Perk. (Styracaceae).

Project description:Styrax faberi Perk., a native plant belonging to Styracaceae mainly distributed in the region south of the Yantze River, China, is both a medicinal and landscape plant. Here we studied the complete chloroplast (cp) genome sequence of S. faberi by using next-generation sequencing. The whole complete cp genome of S. faberi totals 159,424 bp in length, containing a large single-copy (LSC) region of 85,845 bp, and a small single-copy (SSC) region of 18,027 bp 133 genes, including 8 rRNA genes, 37 tRNAs genes, and 88 protein-coding genes constituted the genome. The GC content of S. faberi is 36.92%. The phylogenetic analysis reveals that S. faberi is a sister species to Styrax odoratissimus and Styrax zhejiangensis in Styracaceae.

| S-EPMC7721051 | biostudies-literature

The complete chloroplast genome sequence of Styrax chinensis Hu et S.Y. Liang (Styracaceae).

Project description:Styrax chinensis Hu et S.Y. Liang, is one of the few evergreen species of Styracaceae with fragrant flowers. Here, we characterized the complete chloroplast (cp) genome of S. chinensis using next-generation sequencing. The circular complete cp genome of S. chinensis is 158,502 bp in length, containing a large single-copy (LSC) region of 87,817 bp, and a small single-copy (SSC) region of 18,001 bp. It comprises 132 genes, including 8 rRNA genes, 37 tRNAs genes, and 87 protein-coding genes. The GC content of S. chinensis cp genome is 36.93%. The phylogenetic analysis suggests that S. chinensis is a sister species to Styrax suberifolius in Styracaceae.

| S-EPMC7782962 | biostudies-literature

The complete chloroplast genome sequence of Styrax wuyuanensis S. M. Hwang (Styracaceae) from Jiangxi Province, China.

Project description:Styrax wuyuanensis S. M. Hwang is an endemic species distributed in China. In this study, we characterized its complete chloroplast genome. The circular genome of S. wuyuanensis is 157,969 bp in length, and includes two inverted repeat (IRa and IRb) regions of 25,954 bp in length separated by a large single copy (LSC) region of 87,575 bp and a small single copy (SSC) region of 18,486 bp. The total GC content of the S. wuyuanensis chloroplast genome is 37.0%, and a total of 132 functional genes are encoded, including 87 protein-coding genes, 37 tRNA, and eight rRNA. The phylogenetic analysis has shown that S. wuyuanensis is positioned in the Styracaceae clade, as a sister taxon to S. faberi and S. fortunei, confirming the close relationship of S. wuyuanensis with the latter two species.

| S-EPMC8057073 | biostudies-literature