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The complete chloroplast genome of Styrax confusus Hemsl. (Styracaceae).

ABSTRACT: Styrax confusus Hemsl. is valued for its beauty and fragrance. Here, we characterized the complete chloroplast (cp) genome of S. confusus using next-generation sequencing. The circular complete cp genome of S. confusus was 157,981 bp in length, containing a large single-copy (LSC) region of 87,571 bp, and a small single-copy (SSC) region of 18,316 bp. It comprises 133 genes, including eight rRNA genes, 37 tRNA genes, and 88 protein-coding genes. The GC content of S. confusus cp genome is 36.95%. A phylogenetic tree reconstructed by 30 chloroplast genomes reveals that S. confusus is mostly related to Styrax calvescens Perk.

SUBMITTER: Xu X

PROVIDER: S-EPMC7748495 | biostudies-literature |

REPOSITORIES: biostudies-literature

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The complete chloroplast genome of Styrax dasyanthus Perkins (Styracaceae).

Project description:In this work, next-generation sequencing was applied to measure the complete chloroplast genome of S. dasyanthus for the sake of offering valuable genomic information to promote its conservation. The complete chloroplast genome sequence of S. dasyanthus was measured as 157,501 bp in size. It contains the typical structure and gene content of angiosperm plastome, which includes a large single-copy (LSC), a small single-copy (SSC), and 2 inverted repeat (IR) regions of 87,130 bp, 18,277 bp, and 26,047 bp, respectively. The S. dasyanthus chloroplast genome has a total of 130 genes including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Overall, GC contents of the genome were 36.96%. Phylogenetic analysis based on the 29 chloroplast genome measurement demonstrated that S. dasyanthus is most closely related to Styrax grandiflours Griff.

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The complete chloroplast genome sequence of Styrax obassia (Styracaceae).

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The complete chloroplast genome of Styrax faberi Perk. (Styracaceae).

Project description:Styrax faberi Perk., a native plant belonging to Styracaceae mainly distributed in the region south of the Yantze River, China, is both a medicinal and landscape plant. Here we studied the complete chloroplast (cp) genome sequence of S. faberi by using next-generation sequencing. The whole complete cp genome of S. faberi totals 159,424 bp in length, containing a large single-copy (LSC) region of 85,845 bp, and a small single-copy (SSC) region of 18,027 bp 133 genes, including 8 rRNA genes, 37 tRNAs genes, and 88 protein-coding genes constituted the genome. The GC content of S. faberi is 36.92%. The phylogenetic analysis reveals that S. faberi is a sister species to Styrax odoratissimus and Styrax zhejiangensis in Styracaceae.

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The complete chloroplast genome sequence of Styrax odoratissimus (Styracaceae).

Project description:Styrax odoratissimus Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In this study, the complete chloroplast (cp) genome sequence of S. odoratissimus was determined by applying next-generation sequencing. The entire cp genome was determined to be 157,921 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 87,524 bp and 18,301 bp, respectively, which were separated by a pair of 26,048 bp inverted repeat (IR) regions. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of S. odoratissimus genome is 36.96% and the corresponding values in LSC, SSC, and IR regions are 34.80, 30.27, and 42.92%, respectively. A phylogenetic tree reconstructed by 31 chloroplast genomes reveals that S. odoratissimus is most related to Styrax grandiflorus Griffith.

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The complete chloroplast genome sequence of Styrax duclouxii Perkins (Styracaceae).

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The complete chloroplast genome sequence of Styrax calvescens Perk. (Styracaceae).

Project description:Styrax calvescens Perk., is a nice tree, valued for its beauty and fragrance. Here, we characterized the complete chloroplast (cp) genome of S. calvescens using next-generation sequencing. The circular complete cp genome of S. calvescens is 157,951 bp in length, containing a large single-copy (LSC) region of 87,566 bp and a small single-copy (SSC) region of 18,289 bp. It comprises of 133 genes, including 8 rRNA genes, 37 tRNAs genes, and 88 protein-coding genes. The GC content of S. calvescens cp genome is 36.95%. The phylogenetic analysis suggests that S. calvescens is a sister species to Styrax grandiflorus Griffith in Styracaceae.

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The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae).

Project description:Styrax serrulatus Roxburgh (William Roxburgh 1832), which plays an important role in ecology and economy, is a deciduous species of Styracaceae. In this paper, we sequenced, assembled, and annotated the chloroplast (cp) genome of S. serrulatus by using the sequencing data from Illumina Novaseq platform (Illumina, San Diego, CA). The complete cp genome of S. serrulatus is 157,929 base pairs (bp) in length, containing a pair of inverted repeat regions (IRs) of 26,048 bp each, a large single-copy (LSC) region of 87,552 bp, and a small single-copy (SSC) region of 18,281 bp. It contains 133 genes, including 8 rRNA genes, 37 tRNA genes, 87 protein-coding genes, and 1 pseudo gene. The GC content of S. serrulatus cp genome is 36.96%. The phylogenetic analysis suggests that S. serrulatus is a sister species to Styrax agrestis in Styracaceae.

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Chloroplast Genome Evolution and Species Identification of Styrax (Styracaceae).

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The complete chloroplast genome sequence of Styrax chinensis Hu et S.Y. Liang (Styracaceae).

Project description:Styrax chinensis Hu et S.Y. Liang, is one of the few evergreen species of Styracaceae with fragrant flowers. Here, we characterized the complete chloroplast (cp) genome of S. chinensis using next-generation sequencing. The circular complete cp genome of S. chinensis is 158,502 bp in length, containing a large single-copy (LSC) region of 87,817 bp, and a small single-copy (SSC) region of 18,001 bp. It comprises 132 genes, including 8 rRNA genes, 37 tRNAs genes, and 87 protein-coding genes. The GC content of S. chinensis cp genome is 36.93%. The phylogenetic analysis suggests that S. chinensis is a sister species to Styrax suberifolius in Styracaceae.

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