Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nearly complete mitochondrial genome of Siobla xizangensis Xiao, Huang & Zhou, 1988 (Hymenoptera: Tenthredinidae) and phylogenetic analysis.

ABSTRACT: In this study we review the phylogenetic grouping of the sawfly genus Siobla within the superfamily Tenthredinoidea. Using Next Generation Sequencing (NGS), we describe the complete mitochondrial genome of Siobla xizangensis Xiao, Huang & Zhou, 1988. The assembled mitochondrial genome of S. xizangensis was found to be 15015?bp, with three tRNA genes rearranged compared to the ancestral organization. The overall nucleotide composition was 42.6% for A, 11.4% for C, 7.7% for G and 38.3% for T. The phylogenetic tree based on heterogeneity models of 36 Symphytan and two Apocritan recovered the monophyly of Tenthredinidae, and S. xizangensis was identified as the sister group of Tenthredo.

SUBMITTER: Luo X

PROVIDER: S-EPMC7707776 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Nearly complete mitochondrial genome of Siobla xizangensis Xiao, Huang & Zhou, 1988 (Hymenoptera: Tenthredinidae) and phylogenetic analysis.

Luo Xi X Wei Meicai M Niu Gengyun G

Mitochondrial DNA. Part B, Resources 20191120 2

In this study we review the phylogenetic grouping of the sawfly genus Siobla within the superfamily Tenthredinoidea. Using Next Generation Sequencing (NGS), we describe the complete mitochondrial genome of Siobla xizangensis Xiao, Huang & Zhou, 1988. The assembled mitochondrial genome of S. xizangensis was found to be 15015 bp, with three tRNA genes rearranged compared to the ancestral organization. The overall nucleotide composition was 42.6% for A, 11.4% for C, 7.7% for G ...[more]

PMID: 33366338

Similar Datasets

The nearly complete mitochondrial genome of Colochela zhongi Wei, 2016 (Hymenoptera: Tenthredinidae) and phylogenetic analysis.

Project description:We assembled the near-complete mitochondrial genome of Colochela zhongi Wei, 2016 with next-generation sequencing (NGS). The total genome size of C. zhongi was 15,095 bp with 80.6% A + T content, containing 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes. Three tRNA genes rearrangements were found compared to the ancestral organization. Phylogenetic analysis results based on heterogeneity models of 46 Symphytan and two Apocritan strongly supported that C. zhongi was closely related to Siobla xizangensis.

| S-EPMC7782538 | biostudies-literature

The complete mitochondrial genome of Athalia proxima (Hymenoptera: Tenthredinidae) and phylogenetic analysis.

Project description:The nearly complete mitochondrial genome of Athalia proxima is 15852 bp in size, containing 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs, and a partial control region. Compared to ancestral organization, seven tRNA genes were rearranged. Bayesian and maximum-likelihood trees recovered the monophyly of Tenthredinidae and A. proxima was the basal lineage. The mitogenome sequence provided fundamental data for resolving phylogenetic and genetic problems of Tenthredinidae.

| S-EPMC7707687 | biostudies-literature

The complete mitochondrial genome of Hemathlophorus brevigenatus Wei, 2005 (Hymenoptera: Tenthredinidae) with phylogenetic analysis.

Project description:The mitochondrial genome of Hemathlophorus brevigenatus Wei, 2005 collected from Huanggang Mountain of China is described using the NGS approach. The length of the sequence is 15,452 bp containing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region. The overall A + T content is 79.5%. tRNA rearrangements occur in the MQI cluster. Phylogenetic analysis of H. brevigenatus resolved it in a clade with Allantus togatus in Allantinae which provides new evidence for the phylogeny of Tenthredinidae.

| S-EPMC8405070 | biostudies-literature

The complete mitochondrial genome sequence of Taxonus zhangi Wei, 1997 (Hymenoptera: Tenthredinidae) with phylogenetic analysis.

Project description:The complete mitochondrial genome of Taxonus zhangi was 16,002 bp in size, comprises 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and large non-coding A + T region. The phylogenetic result confirms the monophyly of Taxonina and Allantina, and also supports that Xenapateini is the sister group of Allantini which is composed of Taxonina and Allantina.

| S-EPMC8519519 | biostudies-literature

The complete mitochondrial genome of Taxoblenus sinicus Wei & Nie, 1999 (Hymenoptera: Tenthredinidae) and phylogenetic analysis.

Project description:The complete mitochondrial genome of Taxoblenus sinicus Wei & Nie, 1999 was described. The circular genome is 15,878 bp with an A + T content of 80.4%. It contains 37 genes, and an 859 bp control region. The trnI (+)-trnQ (-)-trnM (+) cluster rearranges to trnM (+)-trnQ (-)-CR-trnI (+). Phylogenetic analysis demonstrates that Allantinae is a sister group of Tenthredininae and T. sinicus is one of the basal lineages of Allantinae.

| S-EPMC8218849 | biostudies-literature

The complete mitochondrial genome of a sawfly species, Analcellicampa danfengensis (Hymenoptera: Tenthredinidae).

Project description:The complete mitochondrial genome of the sawfly, Analcellicampa danfengensis, was sequenced and analyzed. This double strand, circular molecule is 15,968 bp in length with an A + T content of 80.9% and contains 13 PCGs, 22 tRNA genes, and two rRNA genes. Gene rearrangement occurs in the mitogenome of A. danfengensis. Two putative control regions are found, respectively with a length of 495 bp and 359 bp. All PCGs use standard ATN as start codons and most PCGs has complete TAN as stop codons. The phylogenetic analysis suggests that A. danfengensis is closely related to Monocellicampa pruni, another species of Tenthredinidae.

| S-EPMC7706906 | biostudies-literature

Characterization of the mitochondrial genome of Eutomostethus vegetus Konow, 1898 (Hymenoptera: Tenthredinidae) and phylogenetic analysis.

Project description:The nearly complete mitochondrial genome of Eutomostethus vegetus Konow, 1898 was high-quality assembled. Several gene rearrangement events were observed in IQM gene cluster by comparing with the inferred insect ancestral mitochondrial genome. Phylogenetic analysis demonstrated the position of Eutomostethus vegetus in the Tenthredinidae and showed that Blennocampinae is a sister group to Fenusinae.

| S-EPMC7783146 | biostudies-literature

Complete mitochondrial genome of Morphostenophanes yunnanus (Zhou, 2020) (Insecta: Coleoptera: Tenebrionidae) and phylogenetic analysis.

Project description:Morphostenophanes yunnanus (Zhou, 2020) is widely distributed from central to eastern Yunnan with distinct geographical variations in morphology. Beetles were collected in Manwan Town, and a mitochondrial genome sequence (GenBank accession number MZ298928) of this species was sequenced using the MGI-SEQ 2000 platform, assembled using NOVOPlasty v4.3.1, and characterized. The mitogenome was a circular DNA molecule of 15,690 bp with 64.710% AT content, which comprised 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and one control region. The protein-coding genes showed the typical ATN (Met) and TTG (Met) start codons, except nad1 and cox1 (TTG as start codon), and were terminated by typical TAN stop codons. The maximum-likelihood polygenetic tree was generated using protein sequences of thirteen protein-coding regions of seventeen mitogenomes with mtREV + G + F + I with 1000 replicates under the Bayesian information criterion using MEGA 11, which showed that M. yunnanus was the most closely related to M. sinicus. This study provides essential genetic and molecular data for phylogenetic analyses of the genus Morphostenophanes.

| S-EPMC9318264 | biostudies-literature

Advancement in sequencing the mitochondrial genome of Birmella discoidalisa Wei, 1994 (Hymenoptera: Tenthredinidae) and the phylogenetic classification of Fenusini.

Project description:The nearly complete mitochondrial genome of Birmella discoidalisa Wei, 1994 has been sequenced and the genome was revised with more comprehensively sequenced to near completion. The new mitogenome sequences were constructed using two separate assembly approaches, both yielding consistent results. Compared with the sequence previously reported (MF197548.1), the trnI (+) and trnQ (-) genes were assembled, and the trnI (+)-trnQ (-) genes were rearranged compared with the ancestral type. The systematic classification of B. discoidalisa was examined to provide a basis for allocation into Tenthredinidae phylogeny.

| S-EPMC7707670 | biostudies-literature

Mitochondrial Phylogenomics of Tenthredinidae (Hymenoptera: Tenthredinoidea) Supports the Monophyly of Megabelesesinae as a Subfamily.

Project description:Tenthredinidae represents one of the external feeders of the most diverse superfamily, Tenthredinoidea, with diverse host plant utilization. In this study, four complete mitochondrial genomes (mitogenomes), those of Cladiucha punctata, Cladiucha magnoliae, Megabeleses magnoliae, and Megabeleses liriodendrovorax, are newly sequenced and comparatively analyzed with previously reported tenthredinid mitogenomes. The close investigation of mitogenomes and the phylogeny of Tenthredinidae leads us to the following conclusions: The subfamilial relationships and phylogenetic placements within Tenthredinidae are mostly found to be similar to the previously suggested phylogenies. However, the present phylogeny supports the monophyly of Megabelesesinae as a subfamily, with the sister-group placement of Cladiucha and Megabeleses outside of Allantinae. The occurrence of the same type of tRNA rearrangements (MQI and ANS1ERF) in the mitogenomes of Megabelesesinae species and the presence of apomorphic morphological characters also provide robust evidence for this new subfamily. The divergence and diversification times of the subfamilies appear to be directly related to colonization of the flowering plants following the Early Cretaceous. The origin time and diversification patterns of Megabelesesinae were also well matched with the divergence times of their host plants from Magnoliaceae.

| S-EPMC8227683 | biostudies-literature