Dataset Information

Impact of Case-Mix Measurement Error on Estimation and Inference in Profiling of Health Care Providers.

ABSTRACT: Profiling analysis aims to evaluate health care providers by modeling each provider's performance with respect to a patient outcome, such as unplanned hospital readmission. High-dimensional regression models are used in profiling to risk-adjust for patient case-mix covariates. Case-mix covariates typically ascertained from administrative databases are inherently error-prone. We examine the impact of case-mix measurement error (ME) on profiling models. The results show that even though the models' coefficient estimates are biased, this does not affect the estimation of standardized readmission ratio (SRR). However, ME leads to increased variation in SRR estimates and degrades the ability to identify under-performing providers.

SUBMITTER: Senturk D

PROVIDER: S-EPMC7731965 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Impact of Case-Mix Measurement Error on Estimation and Inference in Profiling of Health Care Providers.

Şentürk Damla D Chen Yanjun Y Estes Jason P JP Campos Luis F LF Rhee Connie M CM Kalantar-Zadeh Kamyar K Nguyen Danh V DV

Communications in statistics: Simulation and computation 20181117 8

Profiling analysis aims to evaluate health care providers by modeling each provider's performance with respect to a patient outcome, such as unplanned hospital readmission. High-dimensional regression models are used in profiling to risk-adjust for patient case-mix covariates. Case-mix covariates typically ascertained from administrative databases are inherently error-prone. We examine the impact of case-mix measurement error (ME) on profiling models. The results show that even though the models ...[more]

PMID: 33311842

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Project description:Several studies have compared metagenome inference performance in different human body sites; however, none specifically reported on the vaginal microbiome. Findings from other body sites cannot easily be generalized to the vaginal microbiome due to unique features of vaginal microbial ecology, and investigators seeking to use metagenome inference in vaginal microbiome research are "flying blind" with respect to potential bias these methods may introduce into analyses. We compared the performance of PICRUSt2 and Tax4Fun2 using paired 16S rRNA gene amplicon sequencing and whole-metagenome sequencing data from vaginal samples from 72 pregnant individuals enrolled in the Pregnancy, Infection, and Nutrition (PIN) cohort. Participants were selected from those with known birth outcomes and adequate 16S rRNA gene amplicon sequencing data in a case-control design. Cases experienced early preterm birth (<32 weeks of gestation), and controls experienced term birth (37 to 41 weeks of gestation). PICRUSt2 and Tax4Fun2 performed modestly overall (median Spearman correlation coefficients between observed and predicted KEGG ortholog [KO] relative abundances of 0.20 and 0.22, respectively). Both methods performed best among Lactobacillus crispatus-dominated vaginal microbiotas (median Spearman correlation coefficients of 0.24 and 0.25, respectively) and worst among Lactobacillus iners-dominated microbiotas (median Spearman correlation coefficients of 0.06 and 0.11, respectively). The same pattern was observed when evaluating correlations between univariable hypothesis test P values generated with observed and predicted metagenome data. Differential metagenome inference performance across vaginal microbiota community types can be considered differential measurement error, which often causes differential misclassification. As such, metagenome inference will introduce hard-to-predict bias (toward or away from the null) in vaginal microbiome research. IMPORTANCE Compared to taxonomic composition, the functional potential within a bacterial community is more relevant to establishing mechanistic understandings and causal relationships between the microbiome and health outcomes. Metagenome inference attempts to bridge the gap between 16S rRNA gene amplicon sequencing and whole-metagenome sequencing by predicting a microbiome's gene content based on its taxonomic composition and annotated genome sequences of its members. Metagenome inference methods have been evaluated primarily among gut samples, where they appear to perform fairly well. Here, we show that metagenome inference performance is markedly worse for the vaginal microbiome and that performance varies across common vaginal microbiome community types. Because these community types are associated with sexual and reproductive outcomes, differential metagenome inference performance will bias vaginal microbiome studies, obscuring relationships of interest. Results from such studies should be interpreted with substantial caution and the understanding that they may over- or underestimate associations with metagenome content.

Dataset Information

Impact of Case-Mix Measurement Error on Estimation and Inference in Profiling of Health Care Providers.

Publications

Impact of Case-Mix Measurement Error on Estimation and Inference in Profiling of Health Care Providers.

Similar Datasets

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