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The complete plastid genome and phylogenetic analysis of Codium fragile.

ABSTRACT: Codium fragile, a nutrient-rich green algae that is both edible and medicinal, it is called a 'rat tail' because of its unique shape, it can reach up to a metre in length and has the functions of clearing heat and detoxifying, detumescence and water, and repelling insects. The plastid genome sequence of C. fragile is 83,422 bp. A total of 105 genes were determined, including 77 protein-encoding genes, 3 rRNA genes, and 25 tRNA genes. Phylogenetic analysis showed that C. fragile clustered together into a single branch with C. simulans and Codium sp. 'arenicola' as sister branches. The plastid genome analysis will help the understanding of Chlorophyta evolution.

SUBMITTER: Jia X

PROVIDER: S-EPMC7748513 | biostudies-literature |

REPOSITORIES: biostudies-literature

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The complete plastid genome and phylogenetic analysis of Gracilaria chilensis.

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The complete plastid genome and phylogenetic analysis of Gracilaria spinulosa.

Project description:Gracilaria spinulosa is an economical species of marine red algae. The length of its plastid genome sequence is 179,082 bp; a total of 236 genes were determined, including 203 protein-encoding genes, 3 rRNA genes, 29 tRNA genes, 1 ribonuclease gene, and 1 intron inserted into the trnM gene. The gene content and structure of Gracilariaceae species were relatively well conserved. Phylogenetic analysis showed that G. spinulosa had a closer relationship with Gracilaria salicornia in Gracilaria. The complete plastid genome sequence provided will help the understanding of Gracilaria evolution.

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Project description:The complete plastid genome of Gracilaria textorii, a marine red macroalga, was determined and analyzed. The plastid genome sequence of G. textorii is 179,609 bp. It contains 237 genes, including 203 protein-encoding genes, 30 tRNA genes, 3 rRNA genes, 1 ribonuclease gene, and 1 intron inserted into the trnM gene. Phylogenetic analysis showed that G. textorii clustered together with Gracilaria salicornia, which helps the better understanding of Gracilaria evolution process.

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Project description:Cotinus coggygria Scop. (Anacardiaceae) is an important ornamental tree with beautiful characteristics that is grown in China. In this study, the complete plastid genome of C. coggygria was sequenced and assembled. This genome was 158,843 bp in size and presented a typical tetrad structure, consisting of a large single-copy region (87,121 bp), a pair of inverted repeat regions (26,829 bp), and a small single-copy region (18,064 bp). A total of 134 genes were annotated, including 88 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. We observed a deletion that caused the loss of the rpl32 gene, and a small expansion of IR regions resulted in the trnH gene accessing IR regions; two copies were obtained. Phylogenetic analysis showed that C. coggygria was most closely related to Pistacia, with 100% bootstrap support within Anacardiaceae. In this study, we report the plastid genome of Cotinus species for the first time, which provides insight into the evolution of the plastid genome in Anacardiaceae and promotes the understanding of Cotinus plants.

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The complete plastid genome of Grateloupia filicina (Rhodophyta) and phylogenetic analysis.

Project description:In this study, we obtained the complete plastid genome of Grateloupia filicina (Lamouroux) C. Agardh using the high-throughput sequencing method. It had circular mapping organization with the length of 195,990 bp and contained 265 genes including 195 protein-coding genes, three rRNA genes, one tmRNA gene, 28 tRNA genes and 38 unidentified open reading frames (ORFs). Moreover, phylogenetic analysis revealed that G. filicina firstly clustered with Grateloupia taiwanensis. The complete plastid genome obtained in this work would be useful for further understanding the evolution of Grateloupia.

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