Browse
Submit Data
Databases
API
Help

Dataset Information

23 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete chloroplast genome of Potaninia mongolica (Rosaceae) from China.

ABSTRACT: The complete chloroplast (cp) genome sequence of Potaninia mongolica has been characterized in this study. The length of cp genome was 152,982 bp, containing a large single-copy region (LSC) of 84,233 bp and a small single-copy region (SSC) of 18,139 bp, which were separated by a pair of 25,305 bp inverted repeat regions (IRs). The genome contained 132 genes, including 86 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The overall GC content is 37.16%. Further, phylogenetic analysis suggested that Potaninia is clustered to genus Dasiphora.

SUBMITTER: Cong L

PROVIDER: S-EPMC7748620 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The complete chloroplast genome of Tugarinovia mongolica Iljin (Asteraceae) from China.

Project description:The complete chloroplast (cp) genome sequence of Tugarinovia mongolica Iljin has been characterized in this study. The cp genome is 153,475 bp in length, containing a large single-copy (LSC) region of 84,434 bp and a small single-copy (SSC) region of 18,715 bp, which were separated by a pair of 25,163 bp inverted repeat regions (IRs). There are 114 unique genes annotated, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 37.62%. Further, phylogenetic analysis suggested that Tugarinovia is clustered to genus Atractylodes.

| S-EPMC8797733 | biostudies-literature

The complete chloroplast genome of Spiraea mongolica Maxim.

Project description:The complete chloroplast genome of Spirea mongolica Maxim. was sequenced and assembled. It is a circular form of 155949 bp in length, which was separated into four distinct regions, a large single copy (LSC) of 84375 bp, a small single copy region (SSC) of 18894 bp, two inverted repeats (IR) of 26340 bp. After annotation, a total of 115 genes were predicted, of which, 70 encode proteins, 8 rRNA, 37 tRNA. The evolutionary history, inferred using Neighbour-Joining method, indicates that S. mongolica was grouped within Rosaceae, and comprised a clade with Spirea blumei G.Don, another species in Spirea, with 100% BS value.

| S-EPMC8118401 | biostudies-literature

The complete chloroplast genome of the Amygdalus ferganensis (Rosaceae) in Xinjiang, China.

Project description:Amygdalus ferganensis is a member of the family Rosaceae. In this paper, we report complete chloroplast genome sequences of A. ferganensis (Rosaceae). The results showed that A. ferganensis complete chloroplast genome comprises 158,365 bp, containing a largen single copy (LSC) region of 86,240 bp, a small single copy (SSC) region of 19,012 bp, and a pair of inverted repeats (IRs) region of 26,386 bp. The genome has a GC content of 42.6%. The LSC, SSC, and IR regions represent 54.46, 12.01, and 33.32% of the A. ferganensis chloroplast genome length. We annotated 112 genes, including 78 protein coding genes, 4 rRNAs, and 30 tRNAs. And A. ferganensis is closely the A. persica.

| S-EPMC7707386 | biostudies-literature

The complete chloroplast genome of Prunus conradinae (Rosaceae), a wild flowering cherry from China.

Project description:Prunus conradinae is a flowering cherry species with high ornamental value. In this study, the complete chloroplast (cp) genome of P. conradinae was obtained using a genome skimming approach. The cp genome was 158,019 bp long, with a large single-copy region of 85,910 bp and a small single-copy region of 19,247 bp separated by two inverted repeats of 26,431 bp. It encodes 130 genes, including 85 protein-coding genes, 37 tRNA genes, and eight ribosomal RNA genes. The phylogenetic analysis indicated that P. conradinae is closely related to the congeners P. maximowiczii, P. takesimensis, P. speciosa, P. serrulata var. spontanea, P. discoidea, and P. matuurai.

| S-EPMC7782140 | biostudies-literature

Complete chloroplast genome of Cerasus fengyangshanica (Rosaceae), a wild flowering cherry endemic to China.

Project description:Cerasus fengyangshanica is a wild flowering cherry endemic to Mount Fengyang, China. Here, we reported the complete chloroplast (cp) genome of C. fengyangshanica (GenBank accession number: MW160272). The cp genome was 157,964 bp long, with a large single-copy region (LSC) of 85,972 bp and a small single-copy region (SSC) of 19,086 bp separated by a pair of inverted repeats (IRs) of 26,453 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that C. fengyangshanica is closely related with Prunus maximowiczii.

| S-EPMC7832537 | biostudies-literature

The complete chloroplast genome of Prunus clarofolia (Rosaceae), a wild cherry endemic to China.

Project description:Prunus clarofolia (Schneid.) Yu et Li is a very attractive wild flowering cherry endemic to China. In this study, the complete chloroplast genome of P. clarofolia was assembled. The total length of the chloroplast genome was 157,899 bp, containing a pair of inverted repeat regions of 26,393 bp each, separated by a small single-copy region of 19,142 bp, and a large single-copy region of 85,971 bp. The overall GC content of the chloroplast genome was 36.71%. The genome contained 131 genes, including 85 protein-coding genes, 37 tRNA genes, eight rRNA genes, and one pseudogene. Phylogenetic analysis revealed that P. clarofolia and P. pseudocerasus showed the closest relationship.

| S-EPMC8741222 | biostudies-literature

Complete Chloroplast Genome Sequence Of Prunus Davidiana (Rosaceae).

Project description:Prunus davidiana is a Chinese wild peach species belonging to the family Rosaceae. In this study, we first assembled the complete chloroplast (cp) genome of P. davidiana by Illumina paired-end reads data, then carried out phylogenetic analysis. The P. davidiana cp genome was 158,055?bp, containing a large single copy region (LSC) of 86,248?bp and a small single copy region (SSC) of 19,047?bp separated by a pair of inverted repeats (IRs) of 26,380?bp. The cp genome contained 131 genes, including 86 protein-coding genes, 37 transfer RNA (tRNA) genes and 8 ribosomal RNA (rRNA) genes. The result of the phylogenetic analysis showed that P. davidiana is closely related to P. mongolica.

| S-EPMC7801015 | biostudies-literature

The complete chloroplast genome of Laurocerasus zippeliana (Rosaceae).

Project description:Laurocerasus zippeliana is a widely known landscape plant with high adaptability. We report herein the complete chloroplast genome sequence of L. zippeliana assembled from Illumina high-throughput sequencing data. With a total length of 158,940 bp, the complete chloroplast genome was a typical quadripartite circle: two inverted repeats (IRs) of 26,339 bp for each, a large single-copy (LSC) region of 87,339 bp, and a small single-copy (SSC) region of 18,923 bp. A total of 110 unique genes were identified, consisting of 78 protein-coding genes, 28 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed the position of L. zippeliana within the order Rosales.

| S-EPMC7706693 | biostudies-literature

The complete chloroplast genome of Rosa cymosa (Rosaceae), a traditional medicinal plant in South China.

Project description:Rosa cymosa is a traditional medicinal and ornamental plant in China. Here, we report the complete chloroplast genome of R. cymosa. The chloroplast genome is 156,607 bp in length with 37.48% GC content, containing a small single-copy (SSC) region (18,763 bp), a large single-copy (LSC) region (85,722 bp), and a pair of inverted repeats (IRs: 26,061 bp each). A total of 139 genes were predicted, including 92 protein-coding genes, eight ribosomal RNA genes, and 39 tRNA genes. Phylogenetic analysis based on chloroplast genomes of 16 plant species shows that R. cymosa is closest to R. chiensis 'Old Bush' and R. lucidissima. These complete chloroplast genomes can be subsequently used for researches of Rosaceae.

| S-EPMC7782239 | biostudies-literature

The complete chloroplast genome of Prinsepia uniflora (Rosaceae), a medicinal plant found in northwest China.

Project description:Prinsepia uniflora Batalin 1892 is a medicinal plant widely distributed in northwest China. In this study, we report and characterize the complete chloroplast (cp) genome sequence of P. uniflora. The entire sequence is 159,179 bp in length, consisting of the large single-copy region (LSC) and small single copy region (SSC) (87,239 and 19,180 bp, respectively); these two regions are separated by a pair of 26,380-bp inverted repeat (IR) regions. The genome contains 131 genes, including 86 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content of the genome is 36.7%. A phylogenetic tree constructed from 18 chloroplast genomes revealed that P. uniflora was clustered with Prinsepia sinensis and Prinsepia utilis, all of which belong to the genus Prinsepia, which is supported as a sister group by a moderate bootstrap support value of 55% with the Malus and Pyrus genera.

| S-EPMC8475127 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data