Browse
Submit Data
Databases
API
Help

Dataset Information

24 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Hemerobius japonicus (Neuroptera: Hemerobiidae).

ABSTRACT: The complete mitochondrial genome of Hemerobius japonicus Nakahara, 1915 was sequenced in this study. The complete mitochondrial genome is a typical double-stranded circular molecule of 18,585 bp (GenBank accession number: MN852445), containing 37 typical animal mitochondrial gene and an A + T-rich region. The gene order is identical to that of the putative ancestral arrangement of insects and other lacewings. 13 protein-coding genes (PCGs) possessed common triplet initiation codons ATN except ND1 possessed TTG and mostly terminated with TAN codons except for ND5 and ND4 with a single T residue adjacent to a downstream tRNA gene. All of the 22 tRNAs, ranging from 63 to 72 bp, can be folded into classic clover-leaf secondary structure except for tRNA^Ser(AGN) , in which the dihydrouridine (DHU) arm did not form a stable stem-loop structure. The control region is 1416 bp long with an A + T content of 90.3%. In the sampled families of Neuroptera, each family showed a monophyletic cluster and Polystoechotidae + Rapismatidae, Osmylidae + the remaining families, Hemerobiidae + (Chrysopidae + (Polystoechotidae + Rapismatidae)) are recovered in phylogenetic analyses with high supports.

SUBMITTER: Zhao Y

PROVIDER: S-EPMC7748667 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The complete mitochondrial genome of Hemerobius spodipennis (Neuroptera: Hemerobiidae).

Project description:The complete mitochondrial genome of Hemerobius spodipennis Yang, 1987 was sequenced in this study. The complete mitochondrial genome is a typical double-stranded circular molecule of 16,343 bp (GenBank accession number: MT268963) comprising of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a control region. The gene order is identical to that of the putative ancestral arrangement of insects and other lacewings. All protein-coding genes initiate with ATN, except COI use CGA as start codons and terminate with TAG or TAA, expect ND5 and ND4 use TA- or a single T-- residue as the stop codon. All tRNAs, ranging from 63 to 72 bp, can be folded into typical clover-leaf secondary structure except for tRNASer(AGN) , in which the dihydrouridine (DHU) arm did not form a stable stem-loop structure. The control region is 1433 bp long with an A + T content of 91.4%. In the sampled families of Neuroptera, each family showed a monophyletic cluster and Polystoechotidae + Rapismatidae, Hemerobiidae + (Chrysopidae + (Polystoechotidae + Rapismatidae)), are recovered in phylogenetic analyses with high supports.

| S-EPMC7510669 | biostudies-literature

The complete mitochondrial genome of Hemerobius simulans Walker (Neuroptera, Hemerobiidae).

Project description:The complete mitochondrial (mt) genome of Hemerobius simulans Walker (Neuroptera, Hemerobiidae) is reported in this work. The whole mt genome is 17,985 bp long and contains 37canonical genes and an A + T-rich region, which is the same with insect ancestral mt genome arrangement. All 13 PCGs used the typical ATN as initiation codons. The control region of H. simulans mt genome is 1,416 bp long and the base composition is 90.0% of A + T. The phylogenetic analysis revealed that Hemerobiidae was monophyletic and was the sister group to Chrysopidae.

| S-EPMC7707194 | biostudies-literature

The complete mitochondrial genome of Micromus paganus (Linnaeus, 1767) (Neuroptera: Hemerobiidae: Microminae) with phylogenetic analysis.

Project description:The complete mitochondrial (mt) genome of Micromus paganus (Linnaeus, 1767) (Neuroptera: Hemerobiidae: Microminae) was assembled and the phylogenetic analysis of Chrysopoidea was conducted. The mt genome was 16,607 bp long including 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and a control region (CR). Twelve PCGs started with typical ATN, but COI initiated with TCG. The control region was 1335 bp long and the base composition was 89.66% of A + T. Phylogenetic analysis revealed that M. paganus was the sister group to Micromus sp. + M. angulatus. Hemerobiinae and Microminae were recovered monophyletic with high support values. However, the monophyly of Drepanepteryginae was not recovered, which needed more samplings from this subfamily in the further study. The closer relationship between Microminae and Drepanepteryginae was supported. Hemerobiidae was demonstrated monophyletic and being the sister group to Chrysopidae.

| S-EPMC8183544 | biostudies-literature

The complete mitochondrial genome of Bullanga florida (Neuroptera: Myrmeleontidae).

Project description:The complete mitochondrial genome (mitogenome) of Bullanga florida (Neuroptera: Myrmeleontidae) was determined. The entire sequence is 15,937?bp in length which contains 13 protein-coding genes (PCGs), 22 tRNAs, two rRNAs and one non-coding AT-rich region. The overall A?+?T content of mitogenome is 73.3%. The gene order and arrangement are similar to other Neuroptera mitogenomes. Thirteen PCGs start with standard ATN initiation codons and stop with termination codons TAA or T. All tRNA genes have a typical clover-leaf secondary structure except for tRNASer (AGN), whose dihydrouridine (DHU) arm do not form a stable stem-loop structure. Two rRNA genes (rrnL and rrnS) are 1325?bp and 776?bp in size, respectively. The phylogenetic analysis is based on the amino acid sequences of 13 PCGs indicates that B. florida is a sister group to Epacanthaclisis banks, and Myrmeleontiformia is the monophyletic group.

| S-EPMC7800613 | biostudies-literature

The complete mitochondrial genome of Conwentzia sinica (Neuroptera: Coniopterygidae).

Project description:The complete mitochondrial genome (mitogenome) of Conwentzia sinica Yang, 1974 was sequenced and analyzed. The sequenced mitogenome is 15,153 bp in size, including 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and one control region. Thirteen PCGs use ATN as the start codon. Most of PCGs terminate with TAA codons but ND5, ND4 with a single T residue, and ND3 terminates with TAG. The lrRNA gene is 1290 bp. The measured length of srRNA gene is 782 bp. Twenty-two tRNA genes possess the typical clover-leaf secondary structure except for tRNASer(AGN) . The phylogenetic result supports the monophyly of the family Coniopterygidae and a closer relationship between Conwentzia and Coniopteryx.

| S-EPMC7707788 | biostudies-literature

Complete mitochondrial genome of Laqueus Japonicus (Brachiopoda, Terebratulida, Laqueidae).

Project description:In this study a complete mitochondrial genome of the species, Laqueus japonicus was sequenced and analysed. The mitochondrial genome size is 14,267?bp with 20.2% A, 15.7% C, 27.1% G, and 37.0% T nucleotide distributions. This is the second complete mitochondrial genome record from the genus Laqueus and first record for the species. Genome structure and gene orientation are identical with previous record of the genus. In addition, phylogenetic relationship of L. japonicus in the subphylum Rhynchonelliformea was investigated by using protein coding genes of complete mitochondrial genome. The present study suggests that the closest species to L. japonicus is L. rubellus and they belong to the family Laqueidae.

| S-EPMC7800451 | biostudies-literature

The complete mitochondrial genome of Mesochaetopterus japonicus (Sedentaria: Chaetopteridae).

Project description:The benthic and tube-building polychaete worm Mesochaetopterus japonicus is abundantly present on the coast of the western Pacific. Here, we report the complete mitochondrial genome of M. japonicus, which is 19,326 bp in length and contains 13 protein-coding genes, 2 rRNA genes and 22 tRNA genes. All 37 genes are encoded on the heavy strand, and AT content is 70.17%. Phylogenetic analyses based on the M. japonicus mitogenome combined with previously published polychaete mitogenome data revealed that M. japonicus was closely related to Chaetopterus variopedatus and Phyllochaetopterus sp., all of which belong to Chaetopteridae. The mitochondrial genome of M. japonicus could provide useful molecular resources for further research on Polychaeta phylogeny and evolution.

| S-EPMC9116246 | biostudies-literature

Characterization of the complete mitochondrial genome of the Libelloides sibiricus (Neuroptera, Ascalaphidae).

Project description:Libelloides sibiricus (Eversmann, 1850) is widely distributed in China, Korea and eastern Russia. To date, few studies have been conducted on this species, with the exception of morphological taxonomy studies. In this study, we sequenced the complete mitochondrial genome (mitogenome) of Libelloides sibiricus, which is 15,811 bp in length, with an overall A + T content of 74.8%, encoding 2 ribosomal RNA genes, 22 transfer RNA genes, 13 protein-coding genes, and a control region. The gene arrangement and components of L. sibiricus are identical to those of most other Neuropteran species. TAA is utilized as the termination codon for most PCGs and TAG for nd1, however, nd6 and atp6 used the incomplete termination codon TA- and cox1, cox2, nd5, cytb had termination codons consisting of only T-. In addition, we selected all known 59 species of Neuroptera from NCBI, and used Sialis hamata, Sialis melania, Sialis longidens and Sialis jiyuni (Megaloptera: Sialidae) as the outgroup. Phylogenetic analysis suggested that the mitogenome of L. sibiricus was the most closely related to L. macaronius and all the owlflies formed the monophyletic group within the superfamily Myrmeleontoidea.

| S-EPMC11018059 | biostudies-literature

The complete mitochondrial genome of Chionoecetes japonicus (Crustacea: Decapoda: Majoidea).

Project description:The complete mitochondrial genome of Chionoecetes japonicus was sequenced using a specimen collected offshore in the East Sea. The genome includes 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a control region (D-loop), with a total length of 16,060 bp. The overall nucleotide composition was 34.91% A, 17.29% C, 10.93% G, and 36.87% T, with 71.78% A + T. In the phylogenetic tree was constructed using maximum-likelihood and Bayesian inference analyses, C. japonicus and C. japonicus pacificus formed a genetic clade that was sister to C. opilio.

| S-EPMC7782079 | biostudies-literature

Complete mitochondrial genome of Appasus japonicus Vuillefroy, 1864 (Hemiptera: Belostomatidae).

Project description:We describe the initial sequencing and assembly of the complete mitochondrial genome of Appasus japonicus Vuillefroy, 1864 (Hemiptera; Belostomatidae; Appasus). The mitochondrial genome of A. japonicus was found to be 18,608 bp. It contains thirteen protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs) and an AT-rich region. The overall base composition of A. japonicus is A-41.9%, C-17.5%, G-11.9%, and T-28.7%. A phylogenetic analysis of 21 species within the order Hemiptera suggests that Diplonychus rusticus is most closely related to A. japonicus.

| S-EPMC9754029 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data