Ontology highlight
ABSTRACT:
SUBMITTER: Campoy JA
PROVIDER: S-EPMC7771071 | biostudies-literature | 2020 Dec
REPOSITORIES: biostudies-literature
Campoy José A JA Sun Hequan H Goel Manish M Jiao Wen-Biao WB Folz-Donahue Kat K Wang Nan N Rubio Manuel M Liu Chang C Kukat Christian C Ruiz David D Huettel Bruno B Schneeberger Korbinian K
Genome biology 20201229 1
Generating chromosome-level, haplotype-resolved assemblies of heterozygous genomes remains challenging. To address this, we developed gamete binning, a method based on single-cell sequencing of haploid gametes enabling separation of the whole-genome sequencing reads into haplotype-specific reads sets. After assembling the reads of each haplotype, the contigs are scaffolded to chromosome level using a genetic map derived from the gametes. We assemble the two genomes of a diploid apricot tree base ...[more]