Browse
Submit Data
Databases
API
Help

Dataset Information

19 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Anax parthenope (Odonata: Anisoptera) assembled from next-generation sequencing data.

ABSTRACT: The complete mitochondrial genome of Anax parthenope was assembled from next-generation sequencing data. The circularized mitochondrial genome spans 15,306 bp with a high A + T content of 74.7% and consists of 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes. Its gene composition and order were similar to Anax imperator. The overall base composition is 36.6% for A, 34.8% for T, 16.8% for C, and 11.8% for G. A phylogeny of 31 dragonfly species clustered this species within Odonata.

SUBMITTER: Ma F

PROVIDER: S-EPMC7782033 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The complete mitochondrial genome of the neotropical helicopter damselfly Megaloprepus caerulatus (Odonata: Zygoptera) assembled from next generation sequencing data.

Project description:Odonata (dragonflies and damselflies) is a small order at the base of flying insects (Pterygota). Resolving family-level phylogenetic relationships within this order receives great attention. Hereby, genetic data already resulted in various changes, which are however still under discussion. Mitochondrial genomes may further enhance such phylogenies. This study presents the complete mitochondrial genome of the Neotropical damselfly Megaloprepus caerulatus based on next generation sequencing (NGS) data on total genomic DNA. The total length comprises 16,094?bp and includes the standard metazoan set of 37 genes together with a 1376?bp long A?+?T rich (control) region. Gene content, gene arrangement and base frequency are consistent with other odonate mitochondrial genomes. It further contains four intergenic spacer regions, indicating a possible family specific feature for the Coenagrionidae and its close relatives.

| S-EPMC7800115 | biostudies-literature

Complete mitochondrial genome of Favonigobius gymnauchen (BLEEKER, 1850) assembled from next-generation sequencing data.

Project description:The complete mitochondrial genome of Favonigobius gymnauchen was sequenced. The circular mitochondrial genome is 16,480 bp and consists of 13 protein-coding, 2 ribosomal RNAs, and 13 transfer RNA genes (GenBank accession no. MN194589). Results of maximum likelihood analysis showed that this species clustered with other species of the family Gobbidae. This study will contribute to the phylogenetics of genus Favonigobius and the other genera of Gobiidae.

| S-EPMC7706631 | biostudies-literature

Complete mitochondrial genome of Ischnura asiatica (Brauer, 1865) assembled from next-generation sequencing data.

Project description:Ischnura asiatica (Brauer, 1865) is a freshwater damselfly belonging to the family Coenagrionidae that is distributed across most of Korea, primarily in areas with low water flow, such as ponds and wetlands. The complete mitochondrial genome of I. asiatica was sequenced by next-generation sequencing. The circular mitochondrial genome was found to be 15,769 bp long, with of 13 protein-coding, two ribosomal RNA, and 22 transfer RNA genes (GenBank accession no. OM310774). Maximum likelihood, phylogenetic analysis showed that this species clustered with other species belonging to the family Coenagrionidae. This study contributes to the phylogeny of damselflies and other members of the family Coenagrionidae.

| S-EPMC9980029 | biostudies-literature

Complete mitochondrial genome of Stictochironomus akizukii (Tokunaga) (Chironomidae, Diptera) assembled from next-generation sequencing data.

Project description:The complete mitochondrial genome of Stictochironomus akizukii (Tokunaga) was sequenced. The circular mitochondrial genome is 15,052 bp and consists of 13 protein-coding, 3 ribosomal RNAs, and 22 transfer RNA genes (GenBank accession no. MT185679). Results of maximum likelihood analysis showed that this species clustered with other species of the family Chironomidae. This study will contribute to the phylogenetics of genus Stictochironomus and the other genera of Chironomidae.

| S-EPMC7782153 | biostudies-literature

Complete mitochondrial genome of the freshwater bryozoan Pectinatella magnifica (Phylactolaemata: Plumatellida) assembled from next-generation sequencing data.

Project description:The complete mitochondrial genome of the freshwater bryozoan Pectinatella magnifica was sequenced. The circular mitochondrial genome is 17,539 bp and consists of 13 protein-coding, two ribosomal RNA, and 22 transfer RNA genes (GenBank accession no. MG546680). The Bayesian comparative analysis of molecular evolution rates revealed no acceleration of the mitochondrial DNA (mtDNA) evolution of P. magnifica. Results of maximum likelihood analysis showed that this species clustered with other species of the phylum Bryozoa.

| S-EPMC7799736 | biostudies-literature

Complete mitochondrial genome sequence of Anax parthenope (Odonata: Anisoptera: Aeshnidae) and phylogenetic analysis.

Project description:Anax parthenope (Odonata: Aeshnidae) is a big dragonfly which can be seen patrolling around ponds, lakes and other still water. In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of A. parthenope. This mitogenome was 15,366 bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs) and two ribosomal RNA unit genes (rRNAs). The nucleotide composition of the mitogenome was biased toward A and T, with 74.8% of A + T content (A 40.1%, T 34.7%, C 14.0%, G 11.2%). Gene order was conserved and identical to most other previously sequenced Aeshnidae dragonflies. Most PCGs of A. parthenope have the conventional start codons ATN (six ATG, three ATT, and two ATC), with the exception of cox1 and nad1 (TTG). Except for three genes (cox1, cox2, and nad5) end with the incomplete stop codon T--, all other PCGs terminated with the stop codon TAA. Phylogenetic analysis showed that A. parthenope is sister to Anax imperator with high support value. All 15 Anisoptera species constituted a major clade with well support, and Aeshnidae had a close relationship with Gomphidae and Libellulidae.

| S-EPMC7808743 | biostudies-literature

Characterization and phylogenetic analysis of the complete mitochondrial genome of Pseudothemis zonata (Odonata: Anisoptera: Libellulidae).

Project description:Pseudothemis zonata is a commonly seen dragonfly with a big yellow or white ringlike spot on the third and fourth segments of its abdomen. In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of P. zonata. This mitogenome was 15,434 bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA unit genes (rRNAs). Gene order was conserved and identical to most other previously sequenced Libellulidae dragonflies. The whole mitogenome exhibited heavy AT nucleotide bias (74.6%). Most PCGs of P. zonata have the conventional start codons ATN (six ATG, three ATT, and two ATC), with the exception of cox1 and nad1 (TTG). Except for four genes (cox1, cox2, cox3, and nad5) end with the incomplete stop codon T-, all other PCGs terminated with the stop codon TAA or TAG. Phylogenetic analysis showed that P. zonata got together with Brachythemis contaminata with high support value, and the relationships ((Brachythemis + Psolodesmus) + ((Hydrobasileus + Trigomphus) + (Orthetrum + Acisoma))) were supported in Libellulidae.

| S-EPMC7808373 | biostudies-literature

Characterization and phylogenetic analysis of the complete mitochondrial genome of Neurothemis fulvia (Odonata: Anisoptera: Libellulidae).

Project description:Neurothemis fulvia is a dragonfly of wet forests and usually perches on fallen logs and shrubs. In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of N. fulvia. This mitogenome was 15,459 bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA unit genes (rRNAs). The nucleotide composition of the mitogenome was biased toward A and T, with 70.5% of A + T content (A 38.8%, T 31.7%, C 16.6%, and G 12.9%). Gene order was conserved and identical to most other previously sequenced Libellulidae dragonflies. Most PCGs of N. fulvia have the conventional start codons ATN (six ATG, three ATT, and two ATC), with the exception of cox1 and nad1 (TTG). Except for four PCGs (cox1, cox2, cox3, and nad5) end with the incomplete stop codon T--, all other PCGs terminated with the stop codon TAA or TAG. Phylogenetic analysis showed that N. fulvia got together with Tramea virginia with high support value. Libellulidae had a close relationship with Corduliidae, the relationships ((Hydrobasileus + Brachythemis) + (Orthetrum + (Acisoma + (Neurothemis + Tramea)))) were supported in Libellulidae.

| S-EPMC7894433 | biostudies-literature

Complete genome of a novel endornavirus assembled from next-generation sequence data.

Project description:Endornaviruses have large double-stranded RNA (dsRNA) genomes that carry a single open reading frame (ORF). Here we report the complete genome of a novel endornavirus, assembled from next-generation sequence data generated from Vitis vinifera-extracted dsRNA. Two different fungal hosts have been identified for this virus, suggesting that horizontal transmission of the virus is possible.

| S-EPMC3497628 | biostudies-literature

The complete mitochondrial genome of Toxotes chatareus (Toxotes; Toxotidae; Carangaria) assembled by the next-generation sequencing data and phylogenetic analysis of Carangaria.

Project description:We present the complete mitochondrial genome of Toxotes chatareus yielded by the next-generation sequencing data in this study. The complete mitochondrial genome of T. chatareus has 16,543 bp and contained 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a single control region (D-loop). The overall base composition was A 28.75%, C 29.80%, G 15.77%, T 25.68% and its gene arrangement was similar with other Carangaria mitochondrial genomes. Additionally, the phylogenetic relationships of 13 Carangaria species based on the complete mitochondrial genome was analyzed using the neighbor-joining method. The result showed T. chatareus was clustered with L. lactarius suggesting the close phylogenetic affinity they owned. Together, the complete mitochondrial genome of T. chatareus would be beneficial for the study of phylogenetic relationship, taxonomic classification and phylogeography of the Carangaria.

| S-EPMC8526022 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data