Browse
Submit Data
Databases
API
Help

Dataset Information

26 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome sequence of Gerres filamentosus (Perciformes: Gerridae).

ABSTRACT: The complete mitochondrial genome of Gerres filamentosus was sequenced by high throughput sequencing method. Length of this genome is 16,795 bp, containing 13 protein-coding genes, 22 tRNA genes, two rRNA genes and one large non-coding region. ND6 and eight tRNA genes are encoded by L-strand, and others are encoded by H-strand, which is similar to those in most vertebrates. Phylogenetic tree based on 13 protein-coding genes shows that the clade of G. filamentosus is closely clustered with that of Gerres oyena, and families Caproidae and Ephippidae have the closest relationship to Gerridae, comparing with Sillaginidae.

SUBMITTER: Shi W

PROVIDER: S-EPMC7799482 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The complete mitochondrial genome sequence of Aquarius elongatus (Hemiptera: Gerridae).

Project description:In this study, we report the complete mitochondrial genome of Aquarius elongatus. The mitogenome was 15,370 bp in length, comprising 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region. Maximum-likelihood (ML) phylogenetic tree indicated that Aquarius elongatus has a close relationship with Aquarius paludum. In general, this study provides meaningful genetic information for A. elongatus.

| S-EPMC7995909 | biostudies-literature

The complete mitochondrial genome sequence of Abudefduf Bengalensis (Perciformes; Pomacentridae).

Project description:The complete mitochondrial genome of marine fish Abudefduf bengalensis was sequenced by the high throughput sequencing method. The genome of this species is 16,776 bp in length, consisting of 13 protein-coding genes, 22 tRNA genes, two rRNA genes and one large non-coding region. The gene arrangement of A. bengalensis is identical to that of other common fishes. Phylogenetic tree based on 13 protein-coding genes shows that the clade of genus Abudefduf has a closer phylogenetic relationship to the lineage of genus Amphiprion and Premnas biaculeatus than to Labracinus cyclophthalmus.

| S-EPMC7800162 | biostudies-literature

The complete mitochondrial genome sequence of Pelates quadrilineatus (Perciformes: Terapontidae).

Project description:The complete mitochondrial genome of marine fish Pelates quadrilineatus was sequenced by the high throughput sequencing method. This genome was 16,823 bp in length, consisted of 13 protein-coding genes, 22 tRNA genes, two rRNA genes and one large non-coding region. The gene arrangement of P. quadrilineatus is identical to those of other fishes. Phylogenetic tree based on 13 protein coding genes shows that Terapontidae has a closer phylogenetic relationship to Pentacerotidae than to Chaetodontidae.

| S-EPMC7800237 | biostudies-literature

The complete mitochondrial genome sequence of Photopectoralis bindus (Perciformes: Leiognathidae).

Project description:The complete mitochondrial genome of Photopectoralis bindus was sequenced by high throughput sequencing method in this study. Length of this genome is 16,517 bp, containing 13 protein-coding genes, 22 tRNA genes, two rRNA genes and one large non-coding region. ND6 and eight tRNA genes are encoded by L-strand, and others are encoded by H-strand, which is similar to those in most vertebrates. The nucleotide composition of the whole mitogenome is 29.9% A, 30.1% C, 15.1% G, and 25.0% T, with a slight bias of A + T content (54.9%). Phylogenetic tree based on the first and second codon sequences of 12 protein coding genes (except ND6) shows that the clade of P. bindus is closely clustered with that of Gazza minuta, and families Rachycentridae and Carangidae have the closest relationship to Leiognathidae.

| S-EPMC7800585 | biostudies-literature

The complete mitochondrial genome sequence of Siganus sutor (Perciformes: Siganidae).

Project description:The complete mitochondrial genome of a marine fish Siganus sutor was completely sequenced by the high throughput sequencing method. This complete mitochondrial genome was 16,497 bp in length, consisted of 13 protein-coding genes, 22 tRNA genes, two rRNA genes and one large non-coding region. The gene arrangement of S. sutor is identical to those in typical fishes. Phylogenetic tree based on 13 protein-coding genes shows that Siganidae has a closer phylogenetic relationship to Luvaridae than to Ephippidae or Scatophagidae.

| S-EPMC7800407 | biostudies-literature

The complete mitochondrial genome sequence of white perch Morone americana (Perciformes, Moronidae).

Project description:The complete mitochondrial genome of the white perch Morone americana is described in this study. The total length of M. americana mitogenome is 17,966 bp, consisting of 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNA genes and a noncoding control region. As with several other species in Moronidae, the ND6 gene in M. americana is found within the control region rather than at the canonical position between the ND5 and CYTB genes. Phylogenetic analysis based on CYTB gene places M. americana within Moronidae and confirms its close relationship with yellow perch (M. mississippiensis). This study provides a basic resource for further research on genetic structure and demographic history of M. americana.

| S-EPMC7799595 | biostudies-literature

The complete mitochondrial genome sequence and gene organization of Ambassis gymnocephalus (Perciformes, Ambassidae).

Project description:In this study, we firstly obtained the complete mitochondrial genome DNA sequence of the Ambassis gymnocephalus. Its length is 17,388?bp, containing 13 protein-coding genes, 2 rRNAs, 22 tRNAs and a large noncoding region. The overall length of protein coding genes is 11,448?bp, including A (26.75%), G (15.20%), T (26.44%) and C (31.61%). The A?+?T content of control region (1555?bp) is 60.45%. The protein-coding gene COI is started by GTG and ended by AGA. From the phylogenetic tree, we find A. gymnocephalus and Oreochromis niloticus has the closest relationship among 21 related species. This work will provide some valuable information for further studies on A. gymnocephalus and the family Ambassidae.

| S-EPMC7800844 | biostudies-literature

The complete mitochondrial genome sequence of the giant mudskipper, Periophthalmodon schlosseri (Perciformes: gobiidae).

Project description:The complete mitochondrial genome sequence of the giant mudskipper, Periophthalmodon schlosseri, was first reported in this study. The circle genome is 16 470?bp in length, with the base composition of 28.4% T, 15.4% G, 29.2% A and 27.0% C. The mitogenome includes 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and one D-loop region. Only the NADH dehydrogenase subunit 6 (NAD6) and eight tRNA genes are encoded on the light strand. The mitochondrial gene arrangement of P. schlosseri is similar to those of most other gobies. The phylogenetic analysis using the neighbor-joining method showed that the kinship between Periophthalmodon and Periophthalmus is closer than those between Periophthalmodon and other selected genera. Our complete mitogenome data are going to provide the basis for taxonomic and phylogenetic research of amphibious mudskippers.

| S-EPMC7800980 | biostudies-literature

Complete sequence and characterization of the paradise fish Macropodus erythropterus (Perciformes: Macropodusinae) mitochondrial genome.

Project description:Macropodus erythropterus is a small well-known aquarium fish. In the present study, the complete mitochondrial DNA (mtDNA) sequences of M. erythropterus were first determined. The mtDNA of M. erythropterus (GenBank accession no. KU215670) was a circular molecule of 16 495 bp in length with two ribosome RNA (rRNA) genes, 13 protein-coding genes, 22 transfer RNA genes, an L-strand replication origin and a control region (CR). The entire mitogenome nucleotide acid was 15.71% for G, 29.66% for A, 28.37% for T and 26.26% for C with an A?+?T content of 58.03%. And the A?+?T contents of 12S rRNA, 16S rRNA and CR were 55.63%, 57.66% and 66.79%, respectively. This study provides basic molecular data for studying the conservation biology, phylogenetic and evolutionary analysis of Macropodusinae fishes.

| S-EPMC7800590 | biostudies-literature

Complete mitochondrial genome of Lycodes tanakae (Perciformes: Zoarcidae).

Project description:The complete mitochondrial genome of Lycodes tanakae was sequenced for the first time from its muscle tissue using the next-generation sequencing method. Its mitochondrial genome was 16,594 base pairs in length, containing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region. Its overall A, C, G, and T contents were 25.6%, 30.6%, 18.7%, and 25.2%, respectively. Its, A?+?T content (50.8%) was slightly higher than its G?+?C content (49.2%). A phylogenetic tree was built using 10 belonging to the order Perciformes and two species belonging to the order Scorpaeniformes.

| S-EPMC7800433 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data