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Complete mitogenome mapping of potato late blight pathogen, Phytophthora infestans A2 mating type.

ABSTRACT: Complete mitochondrial genome of Phytophthora infestans, A2 mating type (MT) with a size of ?37,767?bp was sequenced. A total of 53 protein-coding genes are predicted on both strands, including 25 tRNA, 2 rRNA, and 18 respiratory proteins. Gene order of A2MT was consistent with that established in A1, despite high level of polymorphism in both coding and non-coding regions. The mtDNA of A2MT was found to have 99.5% and 99.4% homology with Ia and Ib, whereas 94.7% and 94.3% with IIa and IIb, respectively. Study of repeats revealed a dinucleotide (AT)9 specific to A1 and homology of cox1 gene sequence revealed the relationship among 50 Phytophthora species.

SUBMITTER: Patil VU 

PROVIDER: S-EPMC7800244 | biostudies-literature | 2017 Feb

REPOSITORIES: biostudies-literature

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Complete mitogenome mapping of potato late blight pathogen, <i>Phytophthora infestans</i> A<sub>2</sub> mating type.

Patil Virupaksh U VU   Vanishree G G   Pattanayak Debasis D   Sharma Sanjeev S   Bhardwaj Vinay V   Singh B P BP   Chakrabarti S K SK  

Mitochondrial DNA. Part B, Resources 20170216 1

Complete mitochondrial genome of <i>Phytophthora infestans</i>, A<sub>2</sub> mating type (MT) with a size of ≅37,767 bp was sequenced. A total of 53 protein-coding genes are predicted on both strands, including 25 <i>tRNA</i>, 2 <i>rRNA</i>, and 18 respiratory proteins. Gene order of A<sub>2</sub>MT was consistent with that established in A<sub>1</sub>, despite high level of polymorphism in both coding and non-coding regions. The mtDNA of A<sub>2</sub>MT was found to have 99.5% and 99.4% homolo  ...[more]

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