Browse
Submit Data
Databases
API
Help

Dataset Information

24 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete mitochondrial genome of Idioscopus nitidulus (Hemiptera: Cicadellidae).

ABSTRACT: The complete mitogenome of Idioscopus nitidulus (Cicadellidae) was sequenced. It comprises 15,287 base pairs (bp), including 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes and a control region. The phylogenetic analyses based on concatenated thirteen protein-coding genes of mitogenomes recover the monophyly of Auchenorrhyncha (Fulgoromorpha?+?Cicadomorpha) and Sternorrhyncha as a sister group to Auchenorrhyncha. The complete mitogenome sequence of Idioscopus nitidulusis available in the GenBank with accession number: KR024406.

SUBMITTER: Choudhary JS

PROVIDER: S-EPMC7800639 | biostudies-literature | 2018 Feb

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete mitochondrial genome of Idioscopus nitidulus (Hemiptera: Cicadellidae).

Choudhary Jaipal S JS Naaz Naiyar N Das Bikash B Bhatt Bhagwati P BP Prabhakar Chandra S CS

Mitochondrial DNA. Part B, Resources 20180210 1

The complete mitogenome of Idioscopus nitidulus (Cicadellidae) was sequenced. It comprises 15,287 base pairs (bp), including 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes and a control region. The phylogenetic analyses based on concatenated thirteen protein-coding genes of mitogenomes recover the monophyly of Auchenorrhyncha (Fulgoromorpha + Cicadomorpha) and Sternorrhyncha as a sister group to Auchenorrhyncha. The complete mitogenome sequence of Idioscopus nitidulusi ...[more]

PMID: 33474113

Similar Datasets

The complete mitochondrial genome of Macrosteles quadrilineatus (Hemiptera: Cicadellidae).

Project description:The complete mitochondrial genome of the Aster leafhopper Macrosteles quadrilineatus was sequenced using an Illumina-based next-generation sequencing approach. The genome is 16,626 bp in length with 78.0% AT content. It encodes 37 typical mitochondrial genes including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 1 A + T-rich region. Two tandem repeats were identified within the A + T-rich region. One tRNA gene rearrangement (trnW-trnC-trnY→trnC-trnW-trnY) was found between nd2 and cox1.

| S-EPMC7800883 | biostudies-literature

Complete mitochondrial genome of Populicerus confusus (Hemiptera: Cicadellidae: Idiocerinae).

Project description:In this study, we firstly reported the complete mitochondrial genome of Populicerus confuses. The complete mitochondrial genome was 16,395 bp in length which overall base composition was 41.43% A, 36.30% T, 11.54% C, and 10.73% G. It consisted of 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes (12S and 16S rRNA), and a control region (D-loop region). The complete mitochondrial genomes of P. confuses and other 9 species were used for phylogenetic analysis using the Bayesian method. The resulting phylogenetic tree confirms that the Populicerus populi is most closely related to P. confuses. The mitogenome provided the valuable evidence on phylogenetic relationship of the Idiocerinae at the molecular level.

| S-EPMC7782178 | biostudies-literature

Complete mitochondrial genome sequence of Empoascanara dwalata (Hemiptera: Cicadellidae: Typhlocybinae).

Project description:In this study, the complete mitochondrial genome of the leafhopper species Empoascanara dwalata (Hemiptera: Cicadellidae: Typhlocybinae) was sequenced and annotated, and the sequence is available in the GenBank with accession number: MT350235. The circular mitogenome with 15,271 bp in length, including 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one AT-rich region. The nucleotide composition is as follows: A (41.7%), T (34.7%), G (10.6%), and C (13.0%). 11 PCGs have ATN as the start codon, except for atp8 and nad5 genes have TTG. The conventional termination codons (TAA or TAG) occur in 11 PCGs, while cox2 and nad5 use incomplete codon (T--) as termination codon. Phylogenetic analysis using 13 PCGs showed that E. dwalata was clustered with three other Typhlocybine species, which was consistent with the conventional classification.

| S-EPMC7510757 | biostudies-literature

The complete mitochondrial genome of Fieberiella septentrionalis (Hemiptera: Cicadellidae: Deltocephalinae).

Project description:The complete mitochondrial genome of Fieberiella septentrionalis was annotated for the first time in the present study. The mitogenome was found to have circular shape, with 16,175 bp in size, containing 13 protein coding genes (PCGs), 22 transfer-RNA genes, 2 ribosomal-RNA genes, and 1 non-coding region. The nucleotide composition biases toward A and T is 77.9% of the entirety, which is a typical structure of Cicadellidae. All PCGs have ATN as the start codon, TAA and single T as the stop codon. The resulting phylogenetic tree confirms that the F. septentrionalis belongs to the subfamily of Deltocephalinae and Fieberiellini as sister to the remaining tribes of this subfamily.

| S-EPMC8057076 | biostudies-literature

Complete mitochondrial genome of Penthimia melanocephala Motschulsky, 1863 (Hemiptera: Cicadellidae: Deltocephalinae).

Project description:Penthimia is the largest genus in the tribe Penthimiini of the subfamily Deltocephalinae. To date, there are no available mitogenome sequences from Penthimia. In this study, we have sequenced and annotated the complete mitogenome of Penthimia melanocephala (Motschulsky 1863), the mitogenome is 15,308 bp in length, which including 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (rRNAs), 22 transfer RNAs (tRNAs) and a long non-coding region (control Region), base composition of whole sequences are A (50.4%), C (15.3%), G (10.0%), and T (24.3%). All PCGs started with the typical ATN codon and stopped with the typical TAN codon except for COII and COIII stopped with single T. Within phylogenetic tree, Deltocephalinae members were clustered into a clade. The complete mitogenome of P. melanocephala can provide essential DNA molecular data for further evolutionary and phylogenetic analysis.

| S-EPMC7889201 | biostudies-literature

Characterization of the complete mitochondrial genome of Mitjaevia protuberanta（Hemiptera: Cicadellidae: Typhlocybinae）.

Project description:The complete mitogenome of Mitjaevia protuberanta (GenBank accession number MN627216) is 14,032 bp (AT: 77.43%) in length, including 13 protein-coding, 22 transfer RNAs, and 2 ribosomal RNAs. All protein-coding genes used ATN as initiation codon except ND5 that used TTG as initiation codon, and TAA, TAG, and T were termination codons. We constructed a phylogenetic tree from 14 species (Hemiptera) based on the nucleotide sequence of 13 mitochondrial protein-coding genes. The phylogenetic analysis results showed that mitochondrial genome of M. protuberanta had the same characteristics as other Cicadellidae species.

| S-EPMC7748869 | biostudies-literature

The Complete Mitochondrial Genome of Four Hylicinae (Hemiptera: Cicadellidae): Structural Features and Phylogenetic Implications.

Project description:To reveal mtgenome characterizations and reconstruct phylogenetic relationships of Hylicinae, the complete mtgenomes of four hylicine species, including Nacolus tuberculatus, Hylica paradoxa, Balala fujiana, and Kalasha nativa, were sequenced and comparatively analyzed for the first time. We also carried out the richest (11) subfamily sampling of Cicadellidae to date, and reconstructed phylogenetic relationships of Membracoidea among 61 species based on three datasets using maximum likelihood and Bayesian inference analyses. All new sequenced mtgenomes are molecules ranging from 14,918 to 16,221 bp in length and are double stranded, circular in shape. The gene composition and arrangement of these mtgenomes are consistent with members of Membracoidea. Among 13 protein-coding genes, most show typical ATN start codons and TAR (TAA/TAG) or an incomplete stop codon T-, and several genes start by TTG/GTG. Results of the analysis for sliding window, nucleotide diversity, and nonsynonymous substitution/synonymous substitution indicate cox1 is a comparatively slower-evolving gene while atp8 is the fastest gene. In line with previous researches, phylogenetic results indicate that treehopper families are paraphyletic with respect to family Cicadellidae and also support the monophyly of all involved subfamilies including Hylicinae. Relationships among the four hylicine genera were recovered as (Hylica + (Nacolus + (Balala + Kalasha))).

| S-EPMC7762291 | biostudies-literature

The complete mitochondrial genome of leafhopper Koreocerus koreanus (Matsumura, 1915) (Hemiptera: Cicadellidae).

Project description:In this study, the complete mitochondrial genome (mitogenome) of Koreocerus koreanus (Mastsumura, 1915) was sequenced with 16,428 bp in length, which consisted of 37 genes including 22 transfer RNAs genes (tRNAs), 13 protein coding genes (PCGs) and 2 ribosomal RNAs genes (rRNAs). Except COX1 and ATP6 initiated with the TTG, other PCGs started with ATN. The COX1, ND4 and ND4L terminated with an incomplete T, while the remaining PCGs stopped with TAA. Excluding tRNA-Ser1 lacking a DHU arm, 21 tRNA genes with secondary structures were typical of cloverleaf structures. Phylogenetic analysis based on the complete mitochondrial sequences of 28 species (26 Cicadellidae and 2 outgroups) showed that Koreocerus koreanus was clustered into the subfamily Idiocerinae, the complete mitogenome of Koreocerus koreanus provides information for further study of Cicadellidae evolution.

| S-EPMC8354176 | biostudies-literature

The complete mitochondrial genome of the leafhopper Evacanthus acuminatus (Hemiptera: Cicadellidae: Evacanthinae).

Project description:The complete mitogenome of Evacanthus acuminatus was described in this study. The circular molecule is 14,793 bp in length (GenBank accession no. MK948205), and contains 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and an A + T-rich region. The base composition values were A (40.0%), C (11.2%), G (10.0%), and T (38.8%), with an A + T bias (78.8%). ATT, ATG, ATA, TTG were initiation codons and TAA, TAG, T were termination codons. Phylogenetic tree based on concatenated amino acid sequences of 13 PCGs shows that E. acuminatu and Idiocerinae clade form sister groups, and all species of different subfamilies congregate with each other, which is consistent with the traditional taxonomy.

| S-EPMC7707738 | biostudies-literature

The complete mitochondrial genome of the leafhopper Idioscopus clypealis (Hemiptera: Cicadellidae: Idiocerinae).

Project description:We have sequenced the complete mitochondrial genome (mitogenome) of the leafhopper Idioscopus clypealis in Idiocerinae, the mitochondrial genome sequences to be 15,393 bp with an A + T content of 78.3%. The mitogenome includes 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA (tRNA) genes, and one non-coding [A + T]-rich region. These genes are in the same order as in the Idioscopus nitidulus. All protein-coding genes have ATN as the start codon, TAA and single T as the stop codon. The phylogenetic tree confirms that I. clypealis and I. nitidulus are clustered into a clade, and provides the relationships between the Megophthalminae, Deltocephalinae, Idiocerinae, Cicadellinae, and Typhloeybinae.

| S-EPMC7800259 | biostudies-literature